Hb_163472_010

Information

Type -
Description -
Location Contig163472: 16-897
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPT6
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003239 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163472_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_021888_070 0.2475994501 - - Putative CCR4-associated factor 1 like 11 [Glycine soja]
3 Hb_009838_010 0.2758200879 - - -
4 Hb_015690_020 0.2787030301 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
5 Hb_004136_030 0.2813604846 - - -
6 Hb_000258_450 0.3076341036 - - -
7 Hb_005501_050 0.3077509509 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_139138_010 0.3092498535 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
9 Hb_011909_140 0.3123456815 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
10 Hb_007951_130 0.3123553355 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
11 Hb_003159_090 0.3131840386 - - -
12 Hb_171469_010 0.3134145519 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
13 Hb_000369_020 0.3143901448 - - PREDICTED: probable fructokinase-7 [Jatropha curcas]
14 Hb_001047_150 0.3147785433 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
15 Hb_000345_200 0.3163495085 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
16 Hb_002929_050 0.3165676629 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
17 Hb_005701_030 0.3169400891 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001369_240 0.3230319727 - - -
19 Hb_000041_240 0.3232014577 - - glutaredoxin [Hevea brasiliensis]
20 Hb_012572_020 0.3246935138 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_163472_010 Hb_163472_010 Hb_021888_070 Hb_021888_070 Hb_163472_010--Hb_021888_070 Hb_009838_010 Hb_009838_010 Hb_163472_010--Hb_009838_010 Hb_015690_020 Hb_015690_020 Hb_163472_010--Hb_015690_020 Hb_004136_030 Hb_004136_030 Hb_163472_010--Hb_004136_030 Hb_000258_450 Hb_000258_450 Hb_163472_010--Hb_000258_450 Hb_005501_050 Hb_005501_050 Hb_163472_010--Hb_005501_050 Hb_002918_050 Hb_002918_050 Hb_021888_070--Hb_002918_050 Hb_001153_020 Hb_001153_020 Hb_021888_070--Hb_001153_020 Hb_021888_070--Hb_009838_010 Hb_011310_080 Hb_011310_080 Hb_021888_070--Hb_011310_080 Hb_000169_140 Hb_000169_140 Hb_021888_070--Hb_000169_140 Hb_001171_050 Hb_001171_050 Hb_021888_070--Hb_001171_050 Hb_000616_040 Hb_000616_040 Hb_009838_010--Hb_000616_040 Hb_003209_200 Hb_003209_200 Hb_009838_010--Hb_003209_200 Hb_000200_290 Hb_000200_290 Hb_009838_010--Hb_000200_290 Hb_003861_120 Hb_003861_120 Hb_009838_010--Hb_003861_120 Hb_000162_140 Hb_000162_140 Hb_009838_010--Hb_000162_140 Hb_000196_080 Hb_000196_080 Hb_009838_010--Hb_000196_080 Hb_000419_060 Hb_000419_060 Hb_015690_020--Hb_000419_060 Hb_001969_090 Hb_001969_090 Hb_015690_020--Hb_001969_090 Hb_003442_070 Hb_003442_070 Hb_015690_020--Hb_003442_070 Hb_002835_180 Hb_002835_180 Hb_015690_020--Hb_002835_180 Hb_000260_290 Hb_000260_290 Hb_015690_020--Hb_000260_290 Hb_003052_220 Hb_003052_220 Hb_015690_020--Hb_003052_220 Hb_000828_050 Hb_000828_050 Hb_004136_030--Hb_000828_050 Hb_000252_110 Hb_000252_110 Hb_004136_030--Hb_000252_110 Hb_004453_080 Hb_004453_080 Hb_004136_030--Hb_004453_080 Hb_001366_070 Hb_001366_070 Hb_004136_030--Hb_001366_070 Hb_001433_110 Hb_001433_110 Hb_004136_030--Hb_001433_110 Hb_002374_380 Hb_002374_380 Hb_004136_030--Hb_002374_380 Hb_004448_060 Hb_004448_060 Hb_000258_450--Hb_004448_060 Hb_162033_010 Hb_162033_010 Hb_000258_450--Hb_162033_010 Hb_004218_210 Hb_004218_210 Hb_000258_450--Hb_004218_210 Hb_000906_130 Hb_000906_130 Hb_000258_450--Hb_000906_130 Hb_001863_420 Hb_001863_420 Hb_000258_450--Hb_001863_420 Hb_003124_060 Hb_003124_060 Hb_000258_450--Hb_003124_060 Hb_000732_130 Hb_000732_130 Hb_005501_050--Hb_000732_130 Hb_011214_020 Hb_011214_020 Hb_005501_050--Hb_011214_020 Hb_005736_060 Hb_005736_060 Hb_005501_050--Hb_005736_060 Hb_002851_020 Hb_002851_020 Hb_005501_050--Hb_002851_020 Hb_002477_140 Hb_002477_140 Hb_005501_050--Hb_002477_140 Hb_021596_040 Hb_021596_040 Hb_005501_050--Hb_021596_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0292829 0.225957 0 0 0.0568746 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.336873 0.211906 0.09584 0.0643259 0.106357

CAGE analysis