Hb_163508_010

Information

Type -
Description -
Location Contig163508: 158-727
Sequence    

Annotation

kegg
ID rcu:RCOM_1032850
description Mitogen-activated protein kinase kinase kinase, putative (EC:2.7.11.25)
nr
ID XP_012078154.1
description PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
swissprot
ID Q39008
description Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2
trembl
ID A0A067K9I5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12034 PE=4 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase kinase kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163508_010 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
2 Hb_027402_040 0.1451966292 - - Thioredoxin II, putative [Ricinus communis]
3 Hb_003119_050 0.1564366304 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
4 Hb_000540_220 0.1751270526 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
5 Hb_007188_060 0.1989303297 - - -
6 Hb_074184_010 0.204694763 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
7 Hb_000099_090 0.2152045795 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
8 Hb_000890_010 0.2191276842 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000692_120 0.2203542009 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
10 Hb_000221_230 0.2242618503 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
11 Hb_000164_090 0.2268389037 - - hypothetical protein [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA]
12 Hb_004994_130 0.2286795741 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
13 Hb_001300_100 0.234266084 - - -
14 Hb_021530_010 0.2402504155 - - PREDICTED: la protein 1 [Jatropha curcas]
15 Hb_003228_030 0.2404107553 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
16 Hb_000172_490 0.2417996489 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
17 Hb_004920_030 0.2428511361 transcription factor TF Family: Orphans PREDICTED: histidine kinase CKI1 [Jatropha curcas]
18 Hb_005054_310 0.2436146123 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
19 Hb_008020_020 0.2438458763 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
20 Hb_002631_320 0.2444380234 - - hypothetical protein JCGZ_22628 [Jatropha curcas]

Gene co-expression network

sample Hb_163508_010 Hb_163508_010 Hb_027402_040 Hb_027402_040 Hb_163508_010--Hb_027402_040 Hb_003119_050 Hb_003119_050 Hb_163508_010--Hb_003119_050 Hb_000540_220 Hb_000540_220 Hb_163508_010--Hb_000540_220 Hb_007188_060 Hb_007188_060 Hb_163508_010--Hb_007188_060 Hb_074184_010 Hb_074184_010 Hb_163508_010--Hb_074184_010 Hb_000099_090 Hb_000099_090 Hb_163508_010--Hb_000099_090 Hb_027402_040--Hb_003119_050 Hb_003228_030 Hb_003228_030 Hb_027402_040--Hb_003228_030 Hb_005054_310 Hb_005054_310 Hb_027402_040--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_027402_040--Hb_000836_370 Hb_005000_300 Hb_005000_300 Hb_027402_040--Hb_005000_300 Hb_000890_010 Hb_000890_010 Hb_003119_050--Hb_000890_010 Hb_003119_050--Hb_003228_030 Hb_013405_150 Hb_013405_150 Hb_003119_050--Hb_013405_150 Hb_091226_010 Hb_091226_010 Hb_003119_050--Hb_091226_010 Hb_000152_760 Hb_000152_760 Hb_003119_050--Hb_000152_760 Hb_002965_070 Hb_002965_070 Hb_000540_220--Hb_002965_070 Hb_000164_090 Hb_000164_090 Hb_000540_220--Hb_000164_090 Hb_000540_220--Hb_007188_060 Hb_000221_230 Hb_000221_230 Hb_000540_220--Hb_000221_230 Hb_000563_510 Hb_000563_510 Hb_000540_220--Hb_000563_510 Hb_008203_020 Hb_008203_020 Hb_007188_060--Hb_008203_020 Hb_007188_060--Hb_000164_090 Hb_055339_010 Hb_055339_010 Hb_007188_060--Hb_055339_010 Hb_007188_060--Hb_074184_010 Hb_074184_010--Hb_008203_020 Hb_029689_010 Hb_029689_010 Hb_074184_010--Hb_029689_010 Hb_065755_020 Hb_065755_020 Hb_074184_010--Hb_065755_020 Hb_032202_050 Hb_032202_050 Hb_074184_010--Hb_032202_050 Hb_074184_010--Hb_000221_230 Hb_004495_010 Hb_004495_010 Hb_074184_010--Hb_004495_010 Hb_016006_010 Hb_016006_010 Hb_000099_090--Hb_016006_010 Hb_073973_030 Hb_073973_030 Hb_000099_090--Hb_073973_030 Hb_027472_210 Hb_027472_210 Hb_000099_090--Hb_027472_210 Hb_002890_150 Hb_002890_150 Hb_000099_090--Hb_002890_150 Hb_000169_190 Hb_000169_190 Hb_000099_090--Hb_000169_190 Hb_000099_090--Hb_000890_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
586.376 1572.85 1717.58 130.433 427.768 395.316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.8649 85.3725 89.6061 50.6793 39.4334

CAGE analysis