Hb_163566_010

Information

Type -
Description -
Location Contig163566: 54316-55497
Sequence    

Annotation

kegg
ID smo:SELMODRAFT_123709
description hypothetical protein
nr
ID XP_011626608.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID F2EAX3
description Peptidyl-prolyl cis-trans isomerase (Fragment) OS=Hordeum vulgare var. distichum PE=2 SV=1
Gene Ontology
ID GO:0006457
description peptidyl-prolyl cis-trans isomerase fkbp17- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14961: 16004-67708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163566_010 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
2 Hb_005833_010 0.0393871822 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
3 Hb_009663_020 0.0520014485 - - -
4 Hb_016734_100 0.0574414762 - - -
5 Hb_001426_020 0.0581310322 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
6 Hb_024071_030 0.0630808178 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
7 Hb_000487_080 0.0649645405 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
8 Hb_007120_120 0.0669543537 - - protein binding protein, putative [Ricinus communis]
9 Hb_000321_110 0.0690496232 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
10 Hb_126714_010 0.0726965059 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
11 Hb_001642_020 0.076845677 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
12 Hb_006588_140 0.0791205449 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
13 Hb_010577_020 0.0843343258 - - -
14 Hb_001652_100 0.0855683258 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
15 Hb_000358_260 0.0887528621 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
16 Hb_031022_030 0.0967789609 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
17 Hb_001534_130 0.0977590952 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
18 Hb_012035_010 0.0993156965 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
19 Hb_001031_140 0.1003904259 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
20 Hb_000058_180 0.1023895778 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]

Gene co-expression network

sample Hb_163566_010 Hb_163566_010 Hb_005833_010 Hb_005833_010 Hb_163566_010--Hb_005833_010 Hb_009663_020 Hb_009663_020 Hb_163566_010--Hb_009663_020 Hb_016734_100 Hb_016734_100 Hb_163566_010--Hb_016734_100 Hb_001426_020 Hb_001426_020 Hb_163566_010--Hb_001426_020 Hb_024071_030 Hb_024071_030 Hb_163566_010--Hb_024071_030 Hb_000487_080 Hb_000487_080 Hb_163566_010--Hb_000487_080 Hb_126714_010 Hb_126714_010 Hb_005833_010--Hb_126714_010 Hb_006588_140 Hb_006588_140 Hb_005833_010--Hb_006588_140 Hb_010577_020 Hb_010577_020 Hb_005833_010--Hb_010577_020 Hb_000358_260 Hb_000358_260 Hb_005833_010--Hb_000358_260 Hb_005833_010--Hb_001426_020 Hb_007120_120 Hb_007120_120 Hb_009663_020--Hb_007120_120 Hb_009663_020--Hb_024071_030 Hb_009663_020--Hb_016734_100 Hb_001652_100 Hb_001652_100 Hb_009663_020--Hb_001652_100 Hb_000321_110 Hb_000321_110 Hb_009663_020--Hb_000321_110 Hb_016734_100--Hb_001426_020 Hb_016734_100--Hb_000487_080 Hb_001642_020 Hb_001642_020 Hb_016734_100--Hb_001642_020 Hb_001031_140 Hb_001031_140 Hb_016734_100--Hb_001031_140 Hb_016734_100--Hb_007120_120 Hb_001426_020--Hb_000487_080 Hb_001426_020--Hb_001642_020 Hb_001426_020--Hb_001031_140 Hb_024071_030--Hb_007120_120 Hb_000556_060 Hb_000556_060 Hb_024071_030--Hb_000556_060 Hb_024071_030--Hb_000321_110 Hb_009847_010 Hb_009847_010 Hb_024071_030--Hb_009847_010 Hb_000487_080--Hb_001642_020 Hb_000487_080--Hb_001031_140 Hb_012035_010 Hb_012035_010 Hb_000487_080--Hb_012035_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 25.3603 26.8305 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 21.2189

CAGE analysis