Hb_163566_020

Information

Type -
Description -
Location Contig163566: 67022-67598
Sequence    

Annotation

kegg
ID fve:101312890
description peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic-like
nr
ID XP_012090823.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID O81864
description Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic OS=Arabidopsis thaliana GN=FKBP17-1 PE=2 SV=1
trembl
ID A0A067JR09
description Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_03183 PE=4 SV=1
Gene Ontology
ID GO:0006457
description peptidyl-prolyl cis-trans isomerase fkbp17- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14961: 16004-67708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163566_020 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_002014_150 0.0156075107 - - monooxygenase, putative [Ricinus communis]
3 Hb_074312_010 0.0253589767 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
4 Hb_003032_080 0.0321028636 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005610_070 0.0338374505 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
6 Hb_011382_010 0.0379921596 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
7 Hb_007187_010 0.0381362081 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
8 Hb_010288_070 0.0413141865 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
9 Hb_009707_020 0.0418124892 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
10 Hb_000010_160 0.0476917809 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
11 Hb_000703_340 0.0486814689 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
12 Hb_000139_170 0.0488664496 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
13 Hb_005280_020 0.0494570883 - - glycine cleavage system h protein, putative [Ricinus communis]
14 Hb_001775_020 0.0513804412 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
15 Hb_002304_030 0.0544794038 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
16 Hb_001862_040 0.0547391745 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
17 Hb_000844_080 0.0554935158 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
18 Hb_001205_220 0.0577696579 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000512_120 0.058548191 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
20 Hb_002328_080 0.0624029711 - - short-chain dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_163566_020 Hb_163566_020 Hb_002014_150 Hb_002014_150 Hb_163566_020--Hb_002014_150 Hb_074312_010 Hb_074312_010 Hb_163566_020--Hb_074312_010 Hb_003032_080 Hb_003032_080 Hb_163566_020--Hb_003032_080 Hb_005610_070 Hb_005610_070 Hb_163566_020--Hb_005610_070 Hb_011382_010 Hb_011382_010 Hb_163566_020--Hb_011382_010 Hb_007187_010 Hb_007187_010 Hb_163566_020--Hb_007187_010 Hb_002014_150--Hb_003032_080 Hb_002014_150--Hb_074312_010 Hb_002014_150--Hb_005610_070 Hb_002014_150--Hb_011382_010 Hb_010288_070 Hb_010288_070 Hb_002014_150--Hb_010288_070 Hb_074312_010--Hb_005610_070 Hb_074312_010--Hb_011382_010 Hb_074312_010--Hb_007187_010 Hb_074312_010--Hb_010288_070 Hb_003032_080--Hb_010288_070 Hb_001862_040 Hb_001862_040 Hb_003032_080--Hb_001862_040 Hb_003032_080--Hb_005610_070 Hb_003032_080--Hb_074312_010 Hb_005610_070--Hb_010288_070 Hb_005610_070--Hb_011382_010 Hb_002304_030 Hb_002304_030 Hb_005610_070--Hb_002304_030 Hb_000010_160 Hb_000010_160 Hb_011382_010--Hb_000010_160 Hb_011382_010--Hb_007187_010 Hb_009707_020 Hb_009707_020 Hb_011382_010--Hb_009707_020 Hb_001205_220 Hb_001205_220 Hb_011382_010--Hb_001205_220 Hb_007187_010--Hb_009707_020 Hb_007187_010--Hb_000010_160 Hb_007187_010--Hb_001205_220 Hb_000512_120 Hb_000512_120 Hb_007187_010--Hb_000512_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0532597 38.2917 15.3164 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 57.1444

CAGE analysis