Hb_163837_010

Information

Type -
Description -
Location Contig163837: 168-983
Sequence    

Annotation

kegg
ID egr:104422812
description putative F-box protein At1g65770
nr
ID XP_010033545.1
description PREDICTED: putative F-box protein At1g65770 [Eucalyptus grandis]
swissprot
ID Q3EBZ2
description F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1
trembl
ID A0A059AHB3
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02501 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163837_010 0.0 - - PREDICTED: putative F-box protein At1g65770 [Eucalyptus grandis]
2 Hb_012522_010 0.2397824309 - - hypothetical protein VITISV_003261 [Vitis vinifera]
3 Hb_161072_010 0.2405004839 - - -
4 Hb_000304_060 0.2429881512 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
5 Hb_000045_150 0.2528392415 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
6 Hb_000637_120 0.256951928 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
7 Hb_012760_020 0.2681595165 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
8 Hb_003609_020 0.2726294643 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
9 Hb_017434_060 0.2831393209 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
10 Hb_001621_070 0.2840578795 - - hypothetical protein POPTR_0008s05890g [Populus trichocarpa]
11 Hb_011311_020 0.2962699293 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
12 Hb_002700_080 0.2987281336 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
13 Hb_001124_040 0.2991866223 - - PREDICTED: uncharacterized protein LOC103413595 [Malus domestica]
14 Hb_001195_680 0.2998927217 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
15 Hb_004032_420 0.3026492744 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
16 Hb_000733_210 0.3043423897 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
17 Hb_007307_030 0.3066538942 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
18 Hb_073562_010 0.3080286599 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
19 Hb_000990_060 0.3087693769 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
20 Hb_001004_110 0.3090040681 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_163837_010 Hb_163837_010 Hb_012522_010 Hb_012522_010 Hb_163837_010--Hb_012522_010 Hb_161072_010 Hb_161072_010 Hb_163837_010--Hb_161072_010 Hb_000304_060 Hb_000304_060 Hb_163837_010--Hb_000304_060 Hb_000045_150 Hb_000045_150 Hb_163837_010--Hb_000045_150 Hb_000637_120 Hb_000637_120 Hb_163837_010--Hb_000637_120 Hb_012760_020 Hb_012760_020 Hb_163837_010--Hb_012760_020 Hb_012522_010--Hb_012760_020 Hb_012522_010--Hb_000304_060 Hb_004103_030 Hb_004103_030 Hb_012522_010--Hb_004103_030 Hb_001124_040 Hb_001124_040 Hb_012522_010--Hb_001124_040 Hb_000000_100 Hb_000000_100 Hb_012522_010--Hb_000000_100 Hb_161072_010--Hb_000637_120 Hb_161072_010--Hb_001124_040 Hb_037226_010 Hb_037226_010 Hb_161072_010--Hb_037226_010 Hb_138652_010 Hb_138652_010 Hb_161072_010--Hb_138652_010 Hb_130194_010 Hb_130194_010 Hb_161072_010--Hb_130194_010 Hb_000304_060--Hb_000000_100 Hb_000304_060--Hb_012760_020 Hb_000512_070 Hb_000512_070 Hb_000304_060--Hb_000512_070 Hb_000251_090 Hb_000251_090 Hb_000304_060--Hb_000251_090 Hb_003609_020 Hb_003609_020 Hb_000045_150--Hb_003609_020 Hb_004705_140 Hb_004705_140 Hb_000045_150--Hb_004705_140 Hb_008103_120 Hb_008103_120 Hb_000045_150--Hb_008103_120 Hb_073562_010 Hb_073562_010 Hb_000045_150--Hb_073562_010 Hb_004452_010 Hb_004452_010 Hb_000045_150--Hb_004452_010 Hb_001266_060 Hb_001266_060 Hb_000045_150--Hb_001266_060 Hb_149539_010 Hb_149539_010 Hb_000637_120--Hb_149539_010 Hb_006816_450 Hb_006816_450 Hb_000637_120--Hb_006816_450 Hb_000436_010 Hb_000436_010 Hb_000637_120--Hb_000436_010 Hb_001100_010 Hb_001100_010 Hb_000637_120--Hb_001100_010 Hb_001799_080 Hb_001799_080 Hb_000637_120--Hb_001799_080 Hb_000108_170 Hb_000108_170 Hb_012760_020--Hb_000108_170 Hb_000980_070 Hb_000980_070 Hb_012760_020--Hb_000980_070 Hb_012760_020--Hb_000000_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.357661 1.66993 0.132913 0.0239381 0.964906 0.194905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0657417 0.361857 2.06088 1.38003 0

CAGE analysis