Hb_163950_010

Information

Type -
Description -
Location Contig163950: 11262-12846
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163950_010 0.0 - - -
2 Hb_000749_250 0.1199837392 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
3 Hb_001437_240 0.1279380289 - - -
4 Hb_143629_090 0.1505537812 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
5 Hb_000193_250 0.1681322517 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
6 Hb_004882_020 0.1719128745 - - -
7 Hb_009812_020 0.171986311 - - -
8 Hb_001143_090 0.1742244406 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
9 Hb_001232_130 0.1755990057 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
10 Hb_002392_040 0.1756141457 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003943_030 0.1798820451 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
12 Hb_183612_100 0.1818772626 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
13 Hb_000638_020 0.1820744437 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
14 Hb_001946_320 0.182092022 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
15 Hb_152439_020 0.1825234881 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
16 Hb_004907_130 0.1826947121 - - -
17 Hb_011457_170 0.1829437597 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
18 Hb_000003_840 0.1847465473 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
19 Hb_007245_090 0.1853787685 - - -
20 Hb_000436_010 0.1874999111 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_163950_010 Hb_163950_010 Hb_000749_250 Hb_000749_250 Hb_163950_010--Hb_000749_250 Hb_001437_240 Hb_001437_240 Hb_163950_010--Hb_001437_240 Hb_143629_090 Hb_143629_090 Hb_163950_010--Hb_143629_090 Hb_000193_250 Hb_000193_250 Hb_163950_010--Hb_000193_250 Hb_004882_020 Hb_004882_020 Hb_163950_010--Hb_004882_020 Hb_009812_020 Hb_009812_020 Hb_163950_010--Hb_009812_020 Hb_001232_130 Hb_001232_130 Hb_000749_250--Hb_001232_130 Hb_003943_030 Hb_003943_030 Hb_000749_250--Hb_003943_030 Hb_001143_090 Hb_001143_090 Hb_000749_250--Hb_001143_090 Hb_001959_160 Hb_001959_160 Hb_000749_250--Hb_001959_160 Hb_001946_320 Hb_001946_320 Hb_000749_250--Hb_001946_320 Hb_001437_240--Hb_004882_020 Hb_183612_100 Hb_183612_100 Hb_001437_240--Hb_183612_100 Hb_001437_240--Hb_143629_090 Hb_002307_090 Hb_002307_090 Hb_001437_240--Hb_002307_090 Hb_002936_050 Hb_002936_050 Hb_001437_240--Hb_002936_050 Hb_004800_160 Hb_004800_160 Hb_001437_240--Hb_004800_160 Hb_000249_130 Hb_000249_130 Hb_143629_090--Hb_000249_130 Hb_143629_090--Hb_004800_160 Hb_152439_020 Hb_152439_020 Hb_143629_090--Hb_152439_020 Hb_024952_010 Hb_024952_010 Hb_143629_090--Hb_024952_010 Hb_143629_090--Hb_003943_030 Hb_000193_250--Hb_152439_020 Hb_004306_060 Hb_004306_060 Hb_000193_250--Hb_004306_060 Hb_001856_020 Hb_001856_020 Hb_000193_250--Hb_001856_020 Hb_000193_250--Hb_004800_160 Hb_000427_030 Hb_000427_030 Hb_000193_250--Hb_000427_030 Hb_000179_210 Hb_000179_210 Hb_000193_250--Hb_000179_210 Hb_000809_040 Hb_000809_040 Hb_004882_020--Hb_000809_040 Hb_001981_090 Hb_001981_090 Hb_004882_020--Hb_001981_090 Hb_008695_190 Hb_008695_190 Hb_004882_020--Hb_008695_190 Hb_001366_220 Hb_001366_220 Hb_004882_020--Hb_001366_220 Hb_000072_280 Hb_000072_280 Hb_004882_020--Hb_000072_280 Hb_000003_840 Hb_000003_840 Hb_009812_020--Hb_000003_840 Hb_080477_050 Hb_080477_050 Hb_009812_020--Hb_080477_050 Hb_009812_020--Hb_001437_240 Hb_009812_020--Hb_002936_050 Hb_002897_060 Hb_002897_060 Hb_009812_020--Hb_002897_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33793 0.431022 0.0612548 0.0810911 1.85846 0.382782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54079 1.85228 3.77649 0.465548 0

CAGE analysis