Hb_163950_030

Information

Type -
Description -
Location Contig163950: 23096-31468
Sequence    

Annotation

kegg
ID rcu:RCOM_1497070
description hypothetical protein
nr
ID XP_012090311.1
description PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JER9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26153 PE=4 SV=1
Gene Ontology
ID GO:0009507
description chaperone htpg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15039: 23194-23485 , PASA_asmbl_15040: 24107-24775 , PASA_asmbl_15042: 30432-31661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163950_030 0.0 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
2 Hb_004837_030 0.0783864507 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
3 Hb_009694_010 0.0784454774 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004841_010 0.0847134461 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
5 Hb_000494_040 0.0870738402 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
6 Hb_002184_150 0.0905232489 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_000606_090 0.0908385066 - - Far upstream element-binding protein, putative [Ricinus communis]
8 Hb_004060_020 0.0926333106 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_001348_180 0.0926784335 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
10 Hb_002687_130 0.093584985 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]
11 Hb_065500_060 0.0964302987 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
12 Hb_007632_030 0.0966399503 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
13 Hb_008642_040 0.0972211226 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
14 Hb_004109_280 0.1000589785 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
15 Hb_165928_020 0.1007591666 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
16 Hb_001135_060 0.1009824083 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
17 Hb_006064_010 0.1017656356 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
18 Hb_000465_090 0.1024806316 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
19 Hb_054865_120 0.1029368444 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
20 Hb_002893_070 0.1030135756 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_163950_030 Hb_163950_030 Hb_004837_030 Hb_004837_030 Hb_163950_030--Hb_004837_030 Hb_009694_010 Hb_009694_010 Hb_163950_030--Hb_009694_010 Hb_004841_010 Hb_004841_010 Hb_163950_030--Hb_004841_010 Hb_000494_040 Hb_000494_040 Hb_163950_030--Hb_000494_040 Hb_002184_150 Hb_002184_150 Hb_163950_030--Hb_002184_150 Hb_000606_090 Hb_000606_090 Hb_163950_030--Hb_000606_090 Hb_004837_030--Hb_009694_010 Hb_007632_030 Hb_007632_030 Hb_004837_030--Hb_007632_030 Hb_028227_020 Hb_028227_020 Hb_004837_030--Hb_028227_020 Hb_002893_070 Hb_002893_070 Hb_004837_030--Hb_002893_070 Hb_001348_180 Hb_001348_180 Hb_004837_030--Hb_001348_180 Hb_009694_010--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_004096_090 Hb_004096_090 Hb_009694_010--Hb_004096_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_009694_010--Hb_007632_030 Hb_005697_060 Hb_005697_060 Hb_009694_010--Hb_005697_060 Hb_165928_020 Hb_165928_020 Hb_004841_010--Hb_165928_020 Hb_023386_020 Hb_023386_020 Hb_004841_010--Hb_023386_020 Hb_008643_210 Hb_008643_210 Hb_004841_010--Hb_008643_210 Hb_016172_020 Hb_016172_020 Hb_004841_010--Hb_016172_020 Hb_000856_110 Hb_000856_110 Hb_004841_010--Hb_000856_110 Hb_004100_080 Hb_004100_080 Hb_004841_010--Hb_004100_080 Hb_000494_040--Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000494_040--Hb_001135_060 Hb_005862_010 Hb_005862_010 Hb_000494_040--Hb_005862_010 Hb_000373_240 Hb_000373_240 Hb_000494_040--Hb_000373_240 Hb_000010_090 Hb_000010_090 Hb_000494_040--Hb_000010_090 Hb_000700_150 Hb_000700_150 Hb_002184_150--Hb_000700_150 Hb_069662_010 Hb_069662_010 Hb_002184_150--Hb_069662_010 Hb_001205_300 Hb_001205_300 Hb_002184_150--Hb_001205_300 Hb_003440_060 Hb_003440_060 Hb_002184_150--Hb_003440_060 Hb_008642_040 Hb_008642_040 Hb_002184_150--Hb_008642_040 Hb_000606_090--Hb_001135_060 Hb_000212_240 Hb_000212_240 Hb_000606_090--Hb_000212_240 Hb_003665_060 Hb_003665_060 Hb_000606_090--Hb_003665_060 Hb_001444_010 Hb_001444_010 Hb_000606_090--Hb_001444_010 Hb_000025_110 Hb_000025_110 Hb_000606_090--Hb_000025_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.24422 1.53203 4.61307 3.13535 4.53539 7.35805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.03977 5.09752 3.25835 1.77784 4.30825

CAGE analysis