Hb_163968_010

Information

Type -
Description -
Location Contig163968: 1692-2864
Sequence    

Annotation

kegg
ID rcu:RCOM_1610520
description vesicle-associated membrane protein, putative
nr
ID XP_002511657.1
description vesicle-associated membrane protein, putative [Ricinus communis]
swissprot
ID Q9SHC8
description Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1
trembl
ID B9RD68
description Vesicle-associated membrane protein, putative OS=Ricinus communis GN=RCOM_1610520 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 1-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15048: 1829-2820
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163968_010 0.0 - - vesicle-associated membrane protein, putative [Ricinus communis]
2 Hb_004837_220 0.1153780682 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
3 Hb_124951_010 0.1369499522 - - chitinase-like protein [Hevea brasiliensis]
4 Hb_002600_130 0.1493526862 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
5 Hb_000134_030 0.1528250523 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
6 Hb_000076_100 0.1574972562 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
7 Hb_004267_060 0.1582278057 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_010368_080 0.1589206212 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
9 Hb_000631_090 0.1596924682 - - PREDICTED: uncharacterized protein LOC105640619 [Jatropha curcas]
10 Hb_005394_010 0.1604508023 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
11 Hb_129204_020 0.162969649 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
12 Hb_000803_090 0.1631280917 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
13 Hb_015026_020 0.1637025901 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
14 Hb_000890_020 0.1646648466 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
15 Hb_011915_040 0.1649126852 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
16 Hb_004957_020 0.1661303327 - - conserved hypothetical protein [Ricinus communis]
17 Hb_052135_020 0.1671026638 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
18 Hb_001511_030 0.1683113449 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Jatropha curcas]
19 Hb_007426_220 0.1689196173 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
20 Hb_000692_210 0.1691018658 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_163968_010 Hb_163968_010 Hb_004837_220 Hb_004837_220 Hb_163968_010--Hb_004837_220 Hb_124951_010 Hb_124951_010 Hb_163968_010--Hb_124951_010 Hb_002600_130 Hb_002600_130 Hb_163968_010--Hb_002600_130 Hb_000134_030 Hb_000134_030 Hb_163968_010--Hb_000134_030 Hb_000076_100 Hb_000076_100 Hb_163968_010--Hb_000076_100 Hb_004267_060 Hb_004267_060 Hb_163968_010--Hb_004267_060 Hb_005000_140 Hb_005000_140 Hb_004837_220--Hb_005000_140 Hb_010368_080 Hb_010368_080 Hb_004837_220--Hb_010368_080 Hb_004837_220--Hb_004267_060 Hb_001085_300 Hb_001085_300 Hb_004837_220--Hb_001085_300 Hb_000000_340 Hb_000000_340 Hb_004837_220--Hb_000000_340 Hb_124951_010--Hb_002600_130 Hb_000317_190 Hb_000317_190 Hb_124951_010--Hb_000317_190 Hb_124951_010--Hb_000076_100 Hb_001214_190 Hb_001214_190 Hb_124951_010--Hb_001214_190 Hb_124951_010--Hb_000134_030 Hb_003529_180 Hb_003529_180 Hb_002600_130--Hb_003529_180 Hb_003747_050 Hb_003747_050 Hb_002600_130--Hb_003747_050 Hb_000009_220 Hb_000009_220 Hb_002600_130--Hb_000009_220 Hb_011609_010 Hb_011609_010 Hb_002600_130--Hb_011609_010 Hb_004725_030 Hb_004725_030 Hb_002600_130--Hb_004725_030 Hb_008173_060 Hb_008173_060 Hb_000134_030--Hb_008173_060 Hb_002400_050 Hb_002400_050 Hb_000134_030--Hb_002400_050 Hb_002518_200 Hb_002518_200 Hb_000134_030--Hb_002518_200 Hb_000260_610 Hb_000260_610 Hb_000134_030--Hb_000260_610 Hb_000890_020 Hb_000890_020 Hb_000134_030--Hb_000890_020 Hb_015026_020 Hb_015026_020 Hb_000076_100--Hb_015026_020 Hb_000076_100--Hb_010368_080 Hb_000109_130 Hb_000109_130 Hb_000076_100--Hb_000109_130 Hb_000684_100 Hb_000684_100 Hb_000076_100--Hb_000684_100 Hb_000076_100--Hb_000317_190 Hb_000260_770 Hb_000260_770 Hb_004267_060--Hb_000260_770 Hb_001369_030 Hb_001369_030 Hb_004267_060--Hb_001369_030 Hb_001009_120 Hb_001009_120 Hb_004267_060--Hb_001009_120 Hb_000062_360 Hb_000062_360 Hb_004267_060--Hb_000062_360 Hb_000086_430 Hb_000086_430 Hb_004267_060--Hb_000086_430 Hb_001621_110 Hb_001621_110 Hb_004267_060--Hb_001621_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35305 19.271 39.4708 14.7765 3.16083 11.2092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.91019 2.93796 6.16095 9.59763 4.76639

CAGE analysis