Hb_163989_010

Information

Type -
Description -
Location Contig163989: 74-427
Sequence    

Annotation

kegg
ID rcu:RCOM_0175580
description hypothetical protein
nr
ID XP_002527513.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNE4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15049: 2-516
cDNA
(Sanger)
(ID:Location)		 003_O14.ab1: 5-516 , 038_E24.ab1: 5-516 , 044_P15.ab1: 5-516

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163989_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002641_090 0.0528262948 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
3 Hb_005389_030 0.0794021826 - - hypothetical protein VITISV_023348 [Vitis vinifera]
4 Hb_000028_450 0.0855169909 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
5 Hb_005357_040 0.0868127976 - - gibberellin 20-oxidase, putative [Ricinus communis]
6 Hb_100953_010 0.0871707549 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
7 Hb_003082_090 0.089122564 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
8 Hb_002217_400 0.0894307663 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
9 Hb_001369_510 0.0894341667 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
10 Hb_007138_010 0.0950380093 - - PREDICTED: putative laccase-9 [Jatropha curcas]
11 Hb_138585_070 0.0982444609 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000617_160 0.1008407812 - - -
13 Hb_165110_010 0.1095337996 - - PREDICTED: kunitz-type elastase inhibitor BrEI-like [Jatropha curcas]
14 Hb_000732_200 0.1097943088 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000320_240 0.1098092105 - - multicopper oxidase, putative [Ricinus communis]
16 Hb_070266_010 0.1137047346 - - LRR.XII-like protein, partial [Platanus x acerifolia]
17 Hb_004598_020 0.1160460127 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
18 Hb_002267_110 0.11785453 - - -
19 Hb_000984_280 0.1293573831 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
20 Hb_073870_010 0.1316892108 - - hypothetical protein RCOM_0725510 [Ricinus communis]

Gene co-expression network

sample Hb_163989_010 Hb_163989_010 Hb_002641_090 Hb_002641_090 Hb_163989_010--Hb_002641_090 Hb_005389_030 Hb_005389_030 Hb_163989_010--Hb_005389_030 Hb_000028_450 Hb_000028_450 Hb_163989_010--Hb_000028_450 Hb_005357_040 Hb_005357_040 Hb_163989_010--Hb_005357_040 Hb_100953_010 Hb_100953_010 Hb_163989_010--Hb_100953_010 Hb_003082_090 Hb_003082_090 Hb_163989_010--Hb_003082_090 Hb_002641_090--Hb_005389_030 Hb_001369_510 Hb_001369_510 Hb_002641_090--Hb_001369_510 Hb_002641_090--Hb_100953_010 Hb_002641_090--Hb_003082_090 Hb_002641_090--Hb_000028_450 Hb_005389_030--Hb_005357_040 Hb_005389_030--Hb_000028_450 Hb_005389_030--Hb_100953_010 Hb_002217_400 Hb_002217_400 Hb_005389_030--Hb_002217_400 Hb_007138_010 Hb_007138_010 Hb_005389_030--Hb_007138_010 Hb_138585_070 Hb_138585_070 Hb_005389_030--Hb_138585_070 Hb_000028_450--Hb_002217_400 Hb_000028_450--Hb_005357_040 Hb_000028_450--Hb_003082_090 Hb_000028_450--Hb_138585_070 Hb_000617_160 Hb_000617_160 Hb_000028_450--Hb_000617_160 Hb_005357_040--Hb_138585_070 Hb_005357_040--Hb_000617_160 Hb_005357_040--Hb_002217_400 Hb_000732_200 Hb_000732_200 Hb_005357_040--Hb_000732_200 Hb_100953_010--Hb_001369_510 Hb_100953_010--Hb_007138_010 Hb_100953_010--Hb_005357_040 Hb_100953_010--Hb_000028_450 Hb_073870_010 Hb_073870_010 Hb_100953_010--Hb_073870_010 Hb_003082_090--Hb_002217_400 Hb_003082_090--Hb_005357_040 Hb_003082_090--Hb_005389_030 Hb_004598_020 Hb_004598_020 Hb_003082_090--Hb_004598_020 Hb_003082_090--Hb_000617_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.445273 12.4263 36.0201 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.200484 0 4.96033 0

CAGE analysis