Hb_164010_020

Information

Type -
Description -
Location Contig164010: 6666-11746
Sequence    

Annotation

kegg
ID rcu:RCOM_0523110
description DNA-directed RNA polymerase I/III subunits, putative
nr
ID XP_012071041.1
description PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
swissprot
ID Q32L22
description DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus GN=POLR1C PE=2 SV=1
trembl
ID A0A067KWG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01055 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerases i and iii subunit rpac1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164010_020 0.0 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
2 Hb_025557_020 0.0601338468 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
3 Hb_000318_140 0.0756208036 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
4 Hb_005271_070 0.0838503115 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
5 Hb_009615_110 0.0861539513 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
6 Hb_009913_050 0.087009992 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
7 Hb_000258_410 0.0871891907 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
8 Hb_000529_080 0.0879995548 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
9 Hb_011537_040 0.0954224703 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
10 Hb_001956_120 0.0982667173 - - conserved hypothetical protein [Ricinus communis]
11 Hb_018663_020 0.1033324995 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
12 Hb_001946_260 0.1037527893 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
13 Hb_001009_050 0.1046511748 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
14 Hb_000176_110 0.1050136167 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
15 Hb_001348_140 0.1051001143 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002820_040 0.1069618754 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004374_010 0.10758962 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
18 Hb_000058_040 0.1075966497 - - PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial [Jatropha curcas]
19 Hb_004374_150 0.1077637345 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
20 Hb_000035_400 0.1094303955 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]

Gene co-expression network

sample Hb_164010_020 Hb_164010_020 Hb_025557_020 Hb_025557_020 Hb_164010_020--Hb_025557_020 Hb_000318_140 Hb_000318_140 Hb_164010_020--Hb_000318_140 Hb_005271_070 Hb_005271_070 Hb_164010_020--Hb_005271_070 Hb_009615_110 Hb_009615_110 Hb_164010_020--Hb_009615_110 Hb_009913_050 Hb_009913_050 Hb_164010_020--Hb_009913_050 Hb_000258_410 Hb_000258_410 Hb_164010_020--Hb_000258_410 Hb_025557_020--Hb_000318_140 Hb_000631_150 Hb_000631_150 Hb_025557_020--Hb_000631_150 Hb_018663_020 Hb_018663_020 Hb_025557_020--Hb_018663_020 Hb_000116_170 Hb_000116_170 Hb_025557_020--Hb_000116_170 Hb_001226_180 Hb_001226_180 Hb_025557_020--Hb_001226_180 Hb_002820_040 Hb_002820_040 Hb_000318_140--Hb_002820_040 Hb_000318_140--Hb_018663_020 Hb_000318_140--Hb_000631_150 Hb_000035_400 Hb_000035_400 Hb_000318_140--Hb_000035_400 Hb_000318_140--Hb_009615_110 Hb_011537_040 Hb_011537_040 Hb_005271_070--Hb_011537_040 Hb_005271_070--Hb_000258_410 Hb_005741_020 Hb_005741_020 Hb_005271_070--Hb_005741_020 Hb_000500_290 Hb_000500_290 Hb_005271_070--Hb_000500_290 Hb_004374_010 Hb_004374_010 Hb_005271_070--Hb_004374_010 Hb_000320_440 Hb_000320_440 Hb_009615_110--Hb_000320_440 Hb_002955_010 Hb_002955_010 Hb_009615_110--Hb_002955_010 Hb_001009_050 Hb_001009_050 Hb_009615_110--Hb_001009_050 Hb_000270_450 Hb_000270_450 Hb_009615_110--Hb_000270_450 Hb_006173_020 Hb_006173_020 Hb_009615_110--Hb_006173_020 Hb_005214_060 Hb_005214_060 Hb_009913_050--Hb_005214_060 Hb_002942_080 Hb_002942_080 Hb_009913_050--Hb_002942_080 Hb_009913_050--Hb_000318_140 Hb_001396_290 Hb_001396_290 Hb_009913_050--Hb_001396_290 Hb_002048_090 Hb_002048_090 Hb_009913_050--Hb_002048_090 Hb_009913_050--Hb_025557_020 Hb_008406_160 Hb_008406_160 Hb_000258_410--Hb_008406_160 Hb_000997_060 Hb_000997_060 Hb_000258_410--Hb_000997_060 Hb_000237_230 Hb_000237_230 Hb_000258_410--Hb_000237_230 Hb_000258_410--Hb_011537_040 Hb_000176_110 Hb_000176_110 Hb_000258_410--Hb_000176_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.6538 12.388 7.74968 5.08512 45.8893 41.2679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.054 14.9519 5.6265 9.79803 6.07915

CAGE analysis