Hb_164010_040

Information

Type -
Description -
Location Contig164010: 19645-20709
Sequence    

Annotation

kegg
ID rcu:RCOM_0523100
description serine/threonine protein kinase, putative (EC:2.7.11.1)
nr
ID XP_002522785.1
description serine/threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q39183
description Serine/threonine-protein kinase D6PKL2 OS=Arabidopsis thaliana GN=D6PKL2 PE=1 SV=1
trembl
ID B9S9W6
description Serine/threonine protein kinase, putative OS=Ricinus communis GN=RCOM_0523100 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase d6pk

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15071: 16352-20902 , PASA_asmbl_15072: 15916-20909 , PASA_asmbl_15073: 19255-19524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164010_040 0.0 - - serine/threonine protein kinase, putative [Ricinus communis]
2 Hb_002754_010 0.0530231897 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
3 Hb_000869_080 0.056219695 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
4 Hb_062226_130 0.0575636871 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
5 Hb_013358_040 0.0587318991 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
6 Hb_001278_100 0.0639816552 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
7 Hb_002073_200 0.0644995661 - - Phosphatase 2A-2 [Theobroma cacao]
8 Hb_004162_130 0.0656290863 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000868_110 0.0657605065 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
10 Hb_000733_200 0.0668670452 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
11 Hb_000738_020 0.0673524849 - - zinc finger protein, putative [Ricinus communis]
12 Hb_000300_500 0.0701493765 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
13 Hb_000270_310 0.0707091107 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
14 Hb_001359_050 0.0716024933 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000221_190 0.0720201473 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
16 Hb_000331_550 0.0722133864 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
17 Hb_000926_090 0.0750955912 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
18 Hb_003582_060 0.0761186695 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
19 Hb_001473_160 0.0764415021 - - Vesicle-associated membrane protein, putative [Ricinus communis]
20 Hb_095296_010 0.076828056 - - PREDICTED: syntaxin-32 [Jatropha curcas]

Gene co-expression network

sample Hb_164010_040 Hb_164010_040 Hb_002754_010 Hb_002754_010 Hb_164010_040--Hb_002754_010 Hb_000869_080 Hb_000869_080 Hb_164010_040--Hb_000869_080 Hb_062226_130 Hb_062226_130 Hb_164010_040--Hb_062226_130 Hb_013358_040 Hb_013358_040 Hb_164010_040--Hb_013358_040 Hb_001278_100 Hb_001278_100 Hb_164010_040--Hb_001278_100 Hb_002073_200 Hb_002073_200 Hb_164010_040--Hb_002073_200 Hb_000331_550 Hb_000331_550 Hb_002754_010--Hb_000331_550 Hb_000926_090 Hb_000926_090 Hb_002754_010--Hb_000926_090 Hb_065525_040 Hb_065525_040 Hb_002754_010--Hb_065525_040 Hb_002754_010--Hb_013358_040 Hb_001300_150 Hb_001300_150 Hb_002754_010--Hb_001300_150 Hb_000729_030 Hb_000729_030 Hb_000869_080--Hb_000729_030 Hb_000869_080--Hb_013358_040 Hb_000738_020 Hb_000738_020 Hb_000869_080--Hb_000738_020 Hb_005162_090 Hb_005162_090 Hb_000869_080--Hb_005162_090 Hb_000869_080--Hb_002073_200 Hb_062226_130--Hb_000738_020 Hb_062226_130--Hb_005162_090 Hb_000365_230 Hb_000365_230 Hb_062226_130--Hb_000365_230 Hb_003849_110 Hb_003849_110 Hb_062226_130--Hb_003849_110 Hb_003428_010 Hb_003428_010 Hb_062226_130--Hb_003428_010 Hb_000069_310 Hb_000069_310 Hb_013358_040--Hb_000069_310 Hb_000915_180 Hb_000915_180 Hb_013358_040--Hb_000915_180 Hb_013358_040--Hb_002073_200 Hb_013358_040--Hb_003428_010 Hb_012022_040 Hb_012022_040 Hb_001278_100--Hb_012022_040 Hb_000032_380 Hb_000032_380 Hb_001278_100--Hb_000032_380 Hb_000270_310 Hb_000270_310 Hb_001278_100--Hb_000270_310 Hb_003582_060 Hb_003582_060 Hb_001278_100--Hb_003582_060 Hb_000390_300 Hb_000390_300 Hb_001278_100--Hb_000390_300 Hb_000868_110 Hb_000868_110 Hb_002073_200--Hb_000868_110 Hb_000025_730 Hb_000025_730 Hb_002073_200--Hb_000025_730 Hb_002073_200--Hb_000738_020 Hb_095296_010 Hb_095296_010 Hb_002073_200--Hb_095296_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1592 28.5582 32.8039 31.372 19.426 22.743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.5798 37.4158 30.3954 19.6024 17.6725

CAGE analysis