Hb_164019_010

Information

Type -
Description -
Location Contig164019: 551-3720
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164019_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_009615_120 0.2542565854 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
3 Hb_011310_080 0.27118416 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
4 Hb_015934_030 0.2724634863 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_007317_130 0.2743219769 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
6 Hb_000700_080 0.2744361514 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001269_370 0.2817175157 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
8 Hb_002241_030 0.282718236 - - Retrotransposon protein, putative [Theobroma cacao]
9 Hb_001616_110 0.2831715376 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
10 Hb_001541_070 0.2869318695 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
11 Hb_010315_080 0.2882118988 - - -
12 Hb_002301_350 0.290685685 - - 30S ribosomal protein S5, putative [Ricinus communis]
13 Hb_165026_010 0.2910531955 transcription factor TF Family: NAC hypothetical protein JCGZ_14166 [Jatropha curcas]
14 Hb_000270_120 0.2916492291 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
15 Hb_000920_130 0.2940022228 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004574_040 0.2940241226 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
17 Hb_005489_070 0.2946779485 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
18 Hb_002766_050 0.2958143439 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
19 Hb_001625_030 0.2960078524 - - hypothetical protein JCGZ_20707 [Jatropha curcas]
20 Hb_026698_030 0.296745722 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]

Gene co-expression network

sample Hb_164019_010 Hb_164019_010 Hb_009615_120 Hb_009615_120 Hb_164019_010--Hb_009615_120 Hb_011310_080 Hb_011310_080 Hb_164019_010--Hb_011310_080 Hb_015934_030 Hb_015934_030 Hb_164019_010--Hb_015934_030 Hb_007317_130 Hb_007317_130 Hb_164019_010--Hb_007317_130 Hb_000700_080 Hb_000700_080 Hb_164019_010--Hb_000700_080 Hb_001269_370 Hb_001269_370 Hb_164019_010--Hb_001269_370 Hb_000329_290 Hb_000329_290 Hb_009615_120--Hb_000329_290 Hb_000656_310 Hb_000656_310 Hb_009615_120--Hb_000656_310 Hb_032717_060 Hb_032717_060 Hb_009615_120--Hb_032717_060 Hb_001214_180 Hb_001214_180 Hb_009615_120--Hb_001214_180 Hb_140459_010 Hb_140459_010 Hb_009615_120--Hb_140459_010 Hb_009778_060 Hb_009778_060 Hb_009615_120--Hb_009778_060 Hb_011310_080--Hb_009615_120 Hb_000670_100 Hb_000670_100 Hb_011310_080--Hb_000670_100 Hb_000001_130 Hb_000001_130 Hb_011310_080--Hb_000001_130 Hb_000920_130 Hb_000920_130 Hb_011310_080--Hb_000920_130 Hb_002704_070 Hb_002704_070 Hb_011310_080--Hb_002704_070 Hb_000122_210 Hb_000122_210 Hb_011310_080--Hb_000122_210 Hb_000364_040 Hb_000364_040 Hb_015934_030--Hb_000364_040 Hb_000077_390 Hb_000077_390 Hb_015934_030--Hb_000077_390 Hb_003207_100 Hb_003207_100 Hb_015934_030--Hb_003207_100 Hb_003605_240 Hb_003605_240 Hb_015934_030--Hb_003605_240 Hb_003077_050 Hb_003077_050 Hb_015934_030--Hb_003077_050 Hb_007007_070 Hb_007007_070 Hb_015934_030--Hb_007007_070 Hb_002078_270 Hb_002078_270 Hb_007317_130--Hb_002078_270 Hb_000958_100 Hb_000958_100 Hb_007317_130--Hb_000958_100 Hb_001080_030 Hb_001080_030 Hb_007317_130--Hb_001080_030 Hb_000212_370 Hb_000212_370 Hb_007317_130--Hb_000212_370 Hb_005695_080 Hb_005695_080 Hb_007317_130--Hb_005695_080 Hb_000032_400 Hb_000032_400 Hb_007317_130--Hb_000032_400 Hb_005489_070 Hb_005489_070 Hb_000700_080--Hb_005489_070 Hb_000700_080--Hb_000656_310 Hb_000700_080--Hb_009615_120 Hb_001117_130 Hb_001117_130 Hb_000700_080--Hb_001117_130 Hb_001616_110 Hb_001616_110 Hb_000700_080--Hb_001616_110 Hb_002343_010 Hb_002343_010 Hb_000700_080--Hb_002343_010 Hb_002259_170 Hb_002259_170 Hb_001269_370--Hb_002259_170 Hb_000506_110 Hb_000506_110 Hb_001269_370--Hb_000506_110 Hb_001511_090 Hb_001511_090 Hb_001269_370--Hb_001511_090 Hb_000452_030 Hb_000452_030 Hb_001269_370--Hb_000452_030 Hb_001269_370--Hb_000920_130 Hb_001307_100 Hb_001307_100 Hb_001269_370--Hb_001307_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.109834 0.032268 0.0146508 0 0.0130884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0318265 0.0125223 0.0717527 0.00993864 0.0800188

CAGE analysis