Hb_164283_010

Information

Type -
Description -
Location Contig164283: 84-496
Sequence    

Annotation

kegg
ID rcu:RCOM_0725500
description hypothetical protein
nr
ID XP_002524902.1
description hypothetical protein RCOM_0725500 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFY3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0725500 PE=4 SV=1
Gene Ontology
ID GO:0005488
description kinase superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164283_010 0.0 - - hypothetical protein RCOM_0725500 [Ricinus communis]
2 Hb_018591_010 0.0340029814 - - kinase, putative [Ricinus communis]
3 Hb_008418_010 0.0634651511 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
4 Hb_004544_070 0.0642309984 - - unnamed protein product [Vitis vinifera]
5 Hb_006637_040 0.0663598314 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
6 Hb_002749_070 0.0673222429 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
7 Hb_011145_020 0.0739150702 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
8 Hb_000025_740 0.0961586562 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
9 Hb_002301_420 0.1049034595 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
10 Hb_003893_100 0.1049130252 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
11 Hb_000797_030 0.1062340961 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
12 Hb_001922_010 0.1065974742 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
13 Hb_001758_120 0.1123938407 - - unnamed protein product [Vitis vinifera]
14 Hb_012368_080 0.1142566623 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
15 Hb_001545_270 0.1159665998 - - laccase, putative [Ricinus communis]
16 Hb_003097_200 0.1181450608 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000934_170 0.118392566 - - alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_000438_190 0.1187689558 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
19 Hb_000589_100 0.120798139 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_000723_240 0.1212302288 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]

Gene co-expression network

sample Hb_164283_010 Hb_164283_010 Hb_018591_010 Hb_018591_010 Hb_164283_010--Hb_018591_010 Hb_008418_010 Hb_008418_010 Hb_164283_010--Hb_008418_010 Hb_004544_070 Hb_004544_070 Hb_164283_010--Hb_004544_070 Hb_006637_040 Hb_006637_040 Hb_164283_010--Hb_006637_040 Hb_002749_070 Hb_002749_070 Hb_164283_010--Hb_002749_070 Hb_011145_020 Hb_011145_020 Hb_164283_010--Hb_011145_020 Hb_018591_010--Hb_008418_010 Hb_018591_010--Hb_006637_040 Hb_018591_010--Hb_004544_070 Hb_018591_010--Hb_002749_070 Hb_018591_010--Hb_011145_020 Hb_008418_010--Hb_006637_040 Hb_000723_240 Hb_000723_240 Hb_008418_010--Hb_000723_240 Hb_001922_010 Hb_001922_010 Hb_008418_010--Hb_001922_010 Hb_003768_100 Hb_003768_100 Hb_008418_010--Hb_003768_100 Hb_004544_070--Hb_002749_070 Hb_000438_190 Hb_000438_190 Hb_004544_070--Hb_000438_190 Hb_004544_070--Hb_011145_020 Hb_004544_070--Hb_006637_040 Hb_001758_120 Hb_001758_120 Hb_006637_040--Hb_001758_120 Hb_000797_030 Hb_000797_030 Hb_006637_040--Hb_000797_030 Hb_012368_080 Hb_012368_080 Hb_006637_040--Hb_012368_080 Hb_002749_070--Hb_011145_020 Hb_000025_740 Hb_000025_740 Hb_002749_070--Hb_000025_740 Hb_002749_070--Hb_000438_190 Hb_033363_080 Hb_033363_080 Hb_011145_020--Hb_033363_080 Hb_001691_060 Hb_001691_060 Hb_011145_020--Hb_001691_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.428959 0.660534 1.48854 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.85778 0.351631

CAGE analysis