Hb_164300_010

Information

Type -
Description -
Location Contig164300: 2304-3375
Sequence    

Annotation

kegg
ID cic:CICLE_v10012590mg
description hypothetical protein
nr
ID XP_012073925.1
description PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
swissprot
ID Q9FSG7
description Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1
trembl
ID A0A067KNP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08439 PE=4 SV=1
Gene Ontology
ID GO:0005576
description thaumatin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164300_010 0.0 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
2 Hb_000101_370 0.1098562486 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
3 Hb_002081_220 0.1148511701 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
4 Hb_010053_010 0.1346991791 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
5 Hb_000705_090 0.1446774814 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
6 Hb_000215_420 0.1481106794 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
7 Hb_024948_010 0.1502647291 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
8 Hb_106321_010 0.1505680071 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
9 Hb_006573_260 0.153666828 - - -
10 Hb_001532_060 0.16152973 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
11 Hb_000431_140 0.1703111257 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
12 Hb_021888_010 0.174413443 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
13 Hb_000705_100 0.1751087165 - - glutathione s-transferase, putative [Ricinus communis]
14 Hb_002003_030 0.1756783798 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
15 Hb_001377_480 0.1804984872 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
16 Hb_111985_120 0.1835102794 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
17 Hb_027242_010 0.1869459222 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
18 Hb_123560_020 0.1891406105 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
19 Hb_005168_030 0.1905056528 - - unknown [Zea mays]
20 Hb_000832_250 0.1923715385 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]

Gene co-expression network

sample Hb_164300_010 Hb_164300_010 Hb_000101_370 Hb_000101_370 Hb_164300_010--Hb_000101_370 Hb_002081_220 Hb_002081_220 Hb_164300_010--Hb_002081_220 Hb_010053_010 Hb_010053_010 Hb_164300_010--Hb_010053_010 Hb_000705_090 Hb_000705_090 Hb_164300_010--Hb_000705_090 Hb_000215_420 Hb_000215_420 Hb_164300_010--Hb_000215_420 Hb_024948_010 Hb_024948_010 Hb_164300_010--Hb_024948_010 Hb_000101_370--Hb_000215_420 Hb_001377_480 Hb_001377_480 Hb_000101_370--Hb_001377_480 Hb_027242_010 Hb_027242_010 Hb_000101_370--Hb_027242_010 Hb_000101_370--Hb_002081_220 Hb_006573_260 Hb_006573_260 Hb_000101_370--Hb_006573_260 Hb_002081_220--Hb_010053_010 Hb_021888_010 Hb_021888_010 Hb_002081_220--Hb_021888_010 Hb_001532_060 Hb_001532_060 Hb_002081_220--Hb_001532_060 Hb_001158_110 Hb_001158_110 Hb_002081_220--Hb_001158_110 Hb_000128_050 Hb_000128_050 Hb_010053_010--Hb_000128_050 Hb_000552_030 Hb_000552_030 Hb_010053_010--Hb_000552_030 Hb_010053_010--Hb_024948_010 Hb_002081_190 Hb_002081_190 Hb_010053_010--Hb_002081_190 Hb_106321_010 Hb_106321_010 Hb_000705_090--Hb_106321_010 Hb_000705_090--Hb_000215_420 Hb_000705_100 Hb_000705_100 Hb_000705_090--Hb_000705_100 Hb_005168_030 Hb_005168_030 Hb_000705_090--Hb_005168_030 Hb_002003_030 Hb_002003_030 Hb_000705_090--Hb_002003_030 Hb_000215_420--Hb_106321_010 Hb_004519_010 Hb_004519_010 Hb_000215_420--Hb_004519_010 Hb_000215_420--Hb_000705_100 Hb_001019_210 Hb_001019_210 Hb_000215_420--Hb_001019_210 Hb_000431_140 Hb_000431_140 Hb_024948_010--Hb_000431_140 Hb_024948_010--Hb_000128_050 Hb_000832_250 Hb_000832_250 Hb_024948_010--Hb_000832_250 Hb_024948_010--Hb_000552_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.239941 3.62515 0.588774 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0698018 0 0 4.06891 0.329661

CAGE analysis