Hb_164415_010

Information

Type -
Description -
Location Contig164415: 3816-8191
Sequence    

Annotation

kegg
ID rcu:RCOM_2065520
description hypothetical protein
nr
ID XP_002535249.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TAI0
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_2065520 PE=4 SV=1
Gene Ontology
ID GO:0005739
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15109: 3142-3510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164415_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_171685_080 0.1063070533 - - unknown [Allium cepa]
3 Hb_003157_020 0.1095804335 - - PREDICTED: uncharacterized protein LOC104809111 [Tarenaya hassleriana]
4 Hb_006040_010 0.1132284513 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
5 Hb_004987_050 0.114380822 - - -
6 Hb_005054_140 0.1195327777 - - PREDICTED: laccase-4-like [Jatropha curcas]
7 Hb_017415_010 0.1203409888 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
8 Hb_008085_020 0.1270302451 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
9 Hb_003693_040 0.1274925473 - - NADH dehydrogenase subunit 1 [Hevea brasiliensis]
10 Hb_006040_020 0.128178754 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
11 Hb_000002_470 0.1296312883 - - hypothetical protein JCGZ_11185 [Jatropha curcas]
12 Hb_000003_630 0.1296312883 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_000004_050 0.1296312883 - - PREDICTED: uncharacterized protein LOC105766968 [Gossypium raimondii]
14 Hb_000007_350 0.1296312883 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_000010_490 0.1296312883 - - hypothetical protein CICLE_v10027565mg, partial [Citrus clementina]
16 Hb_000017_170 0.1296312883 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
17 Hb_000017_240 0.1296312883 - - -
18 Hb_000022_030 0.1296312883 - - Uncharacterized protein TCM_003129 [Theobroma cacao]
19 Hb_000022_040 0.1296312883 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000023_070 0.1296312883 - - hypothetical protein, partial [Cecembia lonarensis]

Gene co-expression network

sample Hb_164415_010 Hb_164415_010 Hb_171685_080 Hb_171685_080 Hb_164415_010--Hb_171685_080 Hb_003157_020 Hb_003157_020 Hb_164415_010--Hb_003157_020 Hb_006040_010 Hb_006040_010 Hb_164415_010--Hb_006040_010 Hb_004987_050 Hb_004987_050 Hb_164415_010--Hb_004987_050 Hb_005054_140 Hb_005054_140 Hb_164415_010--Hb_005054_140 Hb_017415_010 Hb_017415_010 Hb_164415_010--Hb_017415_010 Hb_171685_080--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_171685_080--Hb_006040_020 Hb_003688_030 Hb_003688_030 Hb_171685_080--Hb_003688_030 Hb_013420_050 Hb_013420_050 Hb_171685_080--Hb_013420_050 Hb_008085_020 Hb_008085_020 Hb_171685_080--Hb_008085_020 Hb_006040_030 Hb_006040_030 Hb_171685_080--Hb_006040_030 Hb_003157_020--Hb_171685_080 Hb_010053_050 Hb_010053_050 Hb_003157_020--Hb_010053_050 Hb_003157_020--Hb_017415_010 Hb_010053_060 Hb_010053_060 Hb_003157_020--Hb_010053_060 Hb_000284_050 Hb_000284_050 Hb_003157_020--Hb_000284_050 Hb_006040_010--Hb_006040_020 Hb_006040_010--Hb_008085_020 Hb_006040_010--Hb_006040_030 Hb_007645_020 Hb_007645_020 Hb_006040_010--Hb_007645_020 Hb_006040_010--Hb_003688_030 Hb_004987_050--Hb_005054_140 Hb_018283_010 Hb_018283_010 Hb_004987_050--Hb_018283_010 Hb_080126_010 Hb_080126_010 Hb_004987_050--Hb_080126_010 Hb_127361_010 Hb_127361_010 Hb_004987_050--Hb_127361_010 Hb_055002_010 Hb_055002_010 Hb_004987_050--Hb_055002_010 Hb_049490_010 Hb_049490_010 Hb_004987_050--Hb_049490_010 Hb_005054_140--Hb_018283_010 Hb_005054_140--Hb_080126_010 Hb_005054_140--Hb_127361_010 Hb_005054_140--Hb_055002_010 Hb_000959_380 Hb_000959_380 Hb_005054_140--Hb_000959_380 Hb_180367_010 Hb_180367_010 Hb_017415_010--Hb_180367_010 Hb_002149_030 Hb_002149_030 Hb_017415_010--Hb_002149_030 Hb_003567_020 Hb_003567_020 Hb_017415_010--Hb_003567_020 Hb_000248_040 Hb_000248_040 Hb_017415_010--Hb_000248_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0166594 0 0 0 0 0.0117506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00958365 1.10625

CAGE analysis