Hb_164458_010

Information

Type -
Description -
Location Contig164458: 229-2329
Sequence    

Annotation

kegg
ID pop:POPTR_0005s25630g
description POPTRDRAFT_1079544; hypothetical protein
nr
ID XP_012071976.1
description PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9FIG9
description Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic OS=Arabidopsis thaliana GN=ARC6 PE=1 SV=1
trembl
ID A0A067KQU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04516 PE=4 SV=1
Gene Ontology
ID GO:0009706
description protein accumulation and replication of chloroplasts chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15112: 295-565 , PASA_asmbl_15113: 574-774 , PASA_asmbl_15114: 1173-1620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164458_010 0.0 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_003025_050 0.1353475548 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
3 Hb_005839_140 0.1499506149 - - -
4 Hb_143960_010 0.1508098494 - - -
5 Hb_002997_160 0.1546264385 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
6 Hb_005260_040 0.1586785438 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
7 Hb_003780_090 0.1599511485 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]
8 Hb_003097_180 0.1599862156 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
9 Hb_002157_050 0.1687231276 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
10 Hb_000120_620 0.1690237484 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
11 Hb_000098_130 0.169388939 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
12 Hb_003157_010 0.1701396184 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
13 Hb_007982_050 0.1702344819 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Jatropha curcas]
14 Hb_000261_290 0.1717145286 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
15 Hb_001807_030 0.171881382 - - PREDICTED: CDT1-like protein b [Jatropha curcas]
16 Hb_003529_130 0.1719983627 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
17 Hb_003430_030 0.172393601 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
18 Hb_000021_020 0.1736350149 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
19 Hb_004017_040 0.1736893802 - - kinetochore protein nuf2, putative [Ricinus communis]
20 Hb_000317_060 0.1753579466 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]

Gene co-expression network

sample Hb_164458_010 Hb_164458_010 Hb_003025_050 Hb_003025_050 Hb_164458_010--Hb_003025_050 Hb_005839_140 Hb_005839_140 Hb_164458_010--Hb_005839_140 Hb_143960_010 Hb_143960_010 Hb_164458_010--Hb_143960_010 Hb_002997_160 Hb_002997_160 Hb_164458_010--Hb_002997_160 Hb_005260_040 Hb_005260_040 Hb_164458_010--Hb_005260_040 Hb_003780_090 Hb_003780_090 Hb_164458_010--Hb_003780_090 Hb_002666_080 Hb_002666_080 Hb_003025_050--Hb_002666_080 Hb_002890_100 Hb_002890_100 Hb_003025_050--Hb_002890_100 Hb_003025_050--Hb_003780_090 Hb_118840_050 Hb_118840_050 Hb_003025_050--Hb_118840_050 Hb_005333_030 Hb_005333_030 Hb_003025_050--Hb_005333_030 Hb_000215_190 Hb_000215_190 Hb_003025_050--Hb_000215_190 Hb_002157_050 Hb_002157_050 Hb_005839_140--Hb_002157_050 Hb_000317_060 Hb_000317_060 Hb_005839_140--Hb_000317_060 Hb_009620_030 Hb_009620_030 Hb_005839_140--Hb_009620_030 Hb_110482_010 Hb_110482_010 Hb_005839_140--Hb_110482_010 Hb_003529_130 Hb_003529_130 Hb_005839_140--Hb_003529_130 Hb_001953_150 Hb_001953_150 Hb_005839_140--Hb_001953_150 Hb_143960_010--Hb_005260_040 Hb_002375_110 Hb_002375_110 Hb_143960_010--Hb_002375_110 Hb_007481_030 Hb_007481_030 Hb_143960_010--Hb_007481_030 Hb_054885_020 Hb_054885_020 Hb_143960_010--Hb_054885_020 Hb_000106_020 Hb_000106_020 Hb_143960_010--Hb_000106_020 Hb_000120_520 Hb_000120_520 Hb_143960_010--Hb_000120_520 Hb_001231_030 Hb_001231_030 Hb_002997_160--Hb_001231_030 Hb_000753_100 Hb_000753_100 Hb_002997_160--Hb_000753_100 Hb_001117_190 Hb_001117_190 Hb_002997_160--Hb_001117_190 Hb_011909_060 Hb_011909_060 Hb_002997_160--Hb_011909_060 Hb_080147_040 Hb_080147_040 Hb_002997_160--Hb_080147_040 Hb_003929_140 Hb_003929_140 Hb_002997_160--Hb_003929_140 Hb_005725_170 Hb_005725_170 Hb_005260_040--Hb_005725_170 Hb_000158_130 Hb_000158_130 Hb_005260_040--Hb_000158_130 Hb_011671_230 Hb_011671_230 Hb_005260_040--Hb_011671_230 Hb_005260_040--Hb_003529_130 Hb_003388_100 Hb_003388_100 Hb_005260_040--Hb_003388_100 Hb_000120_620 Hb_000120_620 Hb_005260_040--Hb_000120_620 Hb_003780_090--Hb_002157_050 Hb_003780_090--Hb_002890_100 Hb_003780_090--Hb_118840_050 Hb_029695_020 Hb_029695_020 Hb_003780_090--Hb_029695_020 Hb_001047_200 Hb_001047_200 Hb_003780_090--Hb_001047_200 Hb_000010_360 Hb_000010_360 Hb_003780_090--Hb_000010_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.22301 9.1747 5.87053 1.45797 6.45775 7.97735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38116 0.406813 1.33161 6.53793 0.732572

CAGE analysis