Hb_164544_010

Information

Type -
Description -
Location Contig164544: 11064-24666
Sequence    

Annotation

kegg
ID rcu:RCOM_0205920
description shk1 kinase-binding protein, putative (EC:2.1.1.125)
nr
ID XP_012087539.1
description PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
swissprot
ID Q8GWT4
description Protein arginine N-methyltransferase 1.5 OS=Arabidopsis thaliana GN=PMRT15 PE=1 SV=2
trembl
ID A0A067JZB6
description Protein arginine N-methyltransferase OS=Jatropha curcas GN=JCGZ_24277 PE=3 SV=1
Gene Ontology
ID GO:0008168
description protein arginine n-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15129: 12053-24482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164544_010 0.0 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
2 Hb_002784_020 0.0556866437 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
3 Hb_004235_080 0.0716098749 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
4 Hb_001089_110 0.0719444373 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002652_030 0.072058297 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
6 Hb_000089_120 0.0756847927 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_017862_020 0.0757261816 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
8 Hb_002374_010 0.0815466599 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
9 Hb_009486_180 0.0819375203 - - unknown [Glycine max]
10 Hb_000935_010 0.082118068 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
11 Hb_008103_070 0.0845674812 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
12 Hb_033642_090 0.0850875742 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004954_070 0.0855077987 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
14 Hb_000923_080 0.0875444646 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
15 Hb_001178_070 0.0876605534 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
16 Hb_000696_230 0.0876928334 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
17 Hb_004410_030 0.0884079646 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_183612_040 0.0889895288 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
19 Hb_000020_150 0.0890167047 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
20 Hb_008159_020 0.0896220386 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_164544_010 Hb_164544_010 Hb_002784_020 Hb_002784_020 Hb_164544_010--Hb_002784_020 Hb_004235_080 Hb_004235_080 Hb_164544_010--Hb_004235_080 Hb_001089_110 Hb_001089_110 Hb_164544_010--Hb_001089_110 Hb_002652_030 Hb_002652_030 Hb_164544_010--Hb_002652_030 Hb_000089_120 Hb_000089_120 Hb_164544_010--Hb_000089_120 Hb_017862_020 Hb_017862_020 Hb_164544_010--Hb_017862_020 Hb_002784_020--Hb_017862_020 Hb_002375_010 Hb_002375_010 Hb_002784_020--Hb_002375_010 Hb_000696_230 Hb_000696_230 Hb_002784_020--Hb_000696_230 Hb_000617_180 Hb_000617_180 Hb_002784_020--Hb_000617_180 Hb_028872_090 Hb_028872_090 Hb_002784_020--Hb_028872_090 Hb_000923_080 Hb_000923_080 Hb_004235_080--Hb_000923_080 Hb_008159_020 Hb_008159_020 Hb_004235_080--Hb_008159_020 Hb_004235_080--Hb_002375_010 Hb_004209_020 Hb_004209_020 Hb_004235_080--Hb_004209_020 Hb_003097_170 Hb_003097_170 Hb_004235_080--Hb_003097_170 Hb_104061_020 Hb_104061_020 Hb_004235_080--Hb_104061_020 Hb_079526_030 Hb_079526_030 Hb_001089_110--Hb_079526_030 Hb_001433_070 Hb_001433_070 Hb_001089_110--Hb_001433_070 Hb_005337_090 Hb_005337_090 Hb_001089_110--Hb_005337_090 Hb_183612_040 Hb_183612_040 Hb_001089_110--Hb_183612_040 Hb_000575_040 Hb_000575_040 Hb_001089_110--Hb_000575_040 Hb_000331_110 Hb_000331_110 Hb_001089_110--Hb_000331_110 Hb_002652_030--Hb_001089_110 Hb_002652_030--Hb_000696_230 Hb_000959_210 Hb_000959_210 Hb_002652_030--Hb_000959_210 Hb_002175_030 Hb_002175_030 Hb_002652_030--Hb_002175_030 Hb_008453_140 Hb_008453_140 Hb_002652_030--Hb_008453_140 Hb_116349_070 Hb_116349_070 Hb_000089_120--Hb_116349_070 Hb_000261_240 Hb_000261_240 Hb_000089_120--Hb_000261_240 Hb_007657_020 Hb_007657_020 Hb_000089_120--Hb_007657_020 Hb_005588_090 Hb_005588_090 Hb_000089_120--Hb_005588_090 Hb_000089_120--Hb_002784_020 Hb_000398_080 Hb_000398_080 Hb_000089_120--Hb_000398_080 Hb_000207_180 Hb_000207_180 Hb_017862_020--Hb_000207_180 Hb_002686_030 Hb_002686_030 Hb_017862_020--Hb_002686_030 Hb_000225_040 Hb_000225_040 Hb_017862_020--Hb_000225_040 Hb_000395_130 Hb_000395_130 Hb_017862_020--Hb_000395_130 Hb_000579_230 Hb_000579_230 Hb_017862_020--Hb_000579_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.35555 6.21866 5.51136 4.31257 7.56125 8.99294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56727 7.31867 4.06573 10.2716 4.14438

CAGE analysis