Hb_164926_030

Information

Type -
Description -
Location Contig164926: 24541-28078
Sequence    

Annotation

kegg
ID rcu:RCOM_1314180
description phosphatidylcholine transfer protein, putative
nr
ID XP_012086635.1
description PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
swissprot
ID Q8R1R3
description StAR-related lipid transfer protein 7, mitochondrial OS=Mus musculus GN=Stard7 PE=2 SV=2
trembl
ID A0A067JZ22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20381 PE=4 SV=1
Gene Ontology
ID GO:0005773
description phosphatidylcholine transfer

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15166: 24587-27999 , PASA_asmbl_15167: 25151-26818 , PASA_asmbl_15168: 26135-26768
cDNA
(Sanger)
(ID:Location)		 004_G21.ab1: 27100-27997 , 024_M12.ab1: 27175-27988 , 035_B18.ab1: 27098-27999 , 046_P08.ab1: 27106-27999

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164926_030 0.0 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
2 Hb_000111_360 0.0919765578 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007672_050 0.0956273338 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
4 Hb_002496_050 0.095997335 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
5 Hb_006915_050 0.0975202868 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
6 Hb_000754_040 0.0979934744 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
7 Hb_000630_070 0.1021566867 - - PREDICTED: cell division protein FtsZ homolog 2-1, chloroplastic [Jatropha curcas]
8 Hb_000212_350 0.1041486805 - - glucosamine-fructose-6-phosphate aminotransferase, putative [Ricinus communis]
9 Hb_008695_210 0.1085025167 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
10 Hb_001002_030 0.1138372993 - - PREDICTED: uncharacterized protein LOC105643537 [Jatropha curcas]
11 Hb_001329_300 0.1144358032 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
12 Hb_000567_260 0.1144712559 - - BnaA09g41440D [Brassica napus]
13 Hb_000907_080 0.1161904728 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
14 Hb_000001_140 0.1173144039 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
15 Hb_000614_230 0.1186138999 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
16 Hb_002006_090 0.1207823775 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
17 Hb_001277_330 0.1219921649 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
18 Hb_015198_020 0.1255334088 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000665_040 0.1255514215 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
20 Hb_000648_110 0.1267560474 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_164926_030 Hb_164926_030 Hb_000111_360 Hb_000111_360 Hb_164926_030--Hb_000111_360 Hb_007672_050 Hb_007672_050 Hb_164926_030--Hb_007672_050 Hb_002496_050 Hb_002496_050 Hb_164926_030--Hb_002496_050 Hb_006915_050 Hb_006915_050 Hb_164926_030--Hb_006915_050 Hb_000754_040 Hb_000754_040 Hb_164926_030--Hb_000754_040 Hb_000630_070 Hb_000630_070 Hb_164926_030--Hb_000630_070 Hb_000111_360--Hb_000754_040 Hb_000111_360--Hb_006915_050 Hb_008695_210 Hb_008695_210 Hb_000111_360--Hb_008695_210 Hb_002518_140 Hb_002518_140 Hb_000111_360--Hb_002518_140 Hb_002006_090 Hb_002006_090 Hb_000111_360--Hb_002006_090 Hb_001277_330 Hb_001277_330 Hb_000111_360--Hb_001277_330 Hb_007672_050--Hb_002496_050 Hb_007672_050--Hb_001277_330 Hb_002686_290 Hb_002686_290 Hb_007672_050--Hb_002686_290 Hb_003376_040 Hb_003376_040 Hb_007672_050--Hb_003376_040 Hb_001828_140 Hb_001828_140 Hb_007672_050--Hb_001828_140 Hb_002496_050--Hb_006915_050 Hb_000236_070 Hb_000236_070 Hb_002496_050--Hb_000236_070 Hb_002253_070 Hb_002253_070 Hb_002496_050--Hb_002253_070 Hb_001017_040 Hb_001017_040 Hb_002496_050--Hb_001017_040 Hb_002016_110 Hb_002016_110 Hb_006915_050--Hb_002016_110 Hb_006915_050--Hb_008695_210 Hb_006915_050--Hb_000754_040 Hb_000907_080 Hb_000907_080 Hb_006915_050--Hb_000907_080 Hb_189003_080 Hb_189003_080 Hb_006915_050--Hb_189003_080 Hb_000754_040--Hb_008695_210 Hb_000754_040--Hb_001277_330 Hb_055062_030 Hb_055062_030 Hb_000754_040--Hb_055062_030 Hb_000754_040--Hb_189003_080 Hb_000630_070--Hb_002496_050 Hb_000630_070--Hb_007672_050 Hb_000096_090 Hb_000096_090 Hb_000630_070--Hb_000096_090 Hb_000630_070--Hb_002253_070 Hb_002681_020 Hb_002681_020 Hb_000630_070--Hb_002681_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
568.744 269.658 161.398 120.466 408.622 454.974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
944.832 376.653 928.227 187.484 330.715

CAGE analysis