Hb_164945_010

Information

Type -
Description -
Location Contig164945: 2802-10778
Sequence    

Annotation

kegg
ID vvi:100260326
description DNA primase small subunit
nr
ID XP_012065032.1
description PREDICTED: DNA primase small subunit [Jatropha curcas]
swissprot
ID P20664
description DNA primase small subunit OS=Mus musculus GN=Prim1 PE=1 SV=1
trembl
ID A0A061GD75
description DNA primase OS=Theobroma cacao GN=TCM_016451 PE=3 SV=1
Gene Ontology
ID GO:1990077
description dna primase small subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15174: 2961-8874 , PASA_asmbl_15175: 8903-9115 , PASA_asmbl_15176: 10072-10340 , PASA_asmbl_15177: 9618-10418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164945_010 0.0 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
2 Hb_000836_300 0.0884709477 - - caax prenyl protease ste24, putative [Ricinus communis]
3 Hb_000958_080 0.0899290092 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000046_080 0.0927563506 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Jatropha curcas]
5 Hb_007163_060 0.0928295325 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
6 Hb_005322_050 0.0951071642 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
7 Hb_083628_010 0.095562028 - - PREDICTED: probable serine protease EDA2 [Jatropha curcas]
8 Hb_004096_160 0.0958435647 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
9 Hb_000805_210 0.1012440973 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
10 Hb_005730_010 0.1084678564 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
11 Hb_002615_070 0.1089086262 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
12 Hb_073171_090 0.1110988984 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
13 Hb_009449_060 0.1115251777 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
14 Hb_172257_010 0.1115624883 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
15 Hb_010789_020 0.1122789512 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
16 Hb_161568_010 0.1129448978 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_000703_160 0.1144520461 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
18 Hb_000438_090 0.1167804494 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
19 Hb_001307_190 0.1167829602 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
20 Hb_005833_030 0.1169001384 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]

Gene co-expression network

sample Hb_164945_010 Hb_164945_010 Hb_000836_300 Hb_000836_300 Hb_164945_010--Hb_000836_300 Hb_000958_080 Hb_000958_080 Hb_164945_010--Hb_000958_080 Hb_000046_080 Hb_000046_080 Hb_164945_010--Hb_000046_080 Hb_007163_060 Hb_007163_060 Hb_164945_010--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_164945_010--Hb_005322_050 Hb_083628_010 Hb_083628_010 Hb_164945_010--Hb_083628_010 Hb_004064_040 Hb_004064_040 Hb_000836_300--Hb_004064_040 Hb_005730_010 Hb_005730_010 Hb_000836_300--Hb_005730_010 Hb_005064_010 Hb_005064_010 Hb_000836_300--Hb_005064_010 Hb_000622_110 Hb_000622_110 Hb_000836_300--Hb_000622_110 Hb_004228_120 Hb_004228_120 Hb_000836_300--Hb_004228_120 Hb_004096_160 Hb_004096_160 Hb_000958_080--Hb_004096_160 Hb_009449_060 Hb_009449_060 Hb_000958_080--Hb_009449_060 Hb_000958_080--Hb_005322_050 Hb_000089_210 Hb_000089_210 Hb_000958_080--Hb_000089_210 Hb_002909_040 Hb_002909_040 Hb_000958_080--Hb_002909_040 Hb_000958_080--Hb_005730_010 Hb_000046_080--Hb_007163_060 Hb_000046_080--Hb_004096_160 Hb_172257_010 Hb_172257_010 Hb_000046_080--Hb_172257_010 Hb_000608_350 Hb_000608_350 Hb_000046_080--Hb_000608_350 Hb_162060_010 Hb_162060_010 Hb_000046_080--Hb_162060_010 Hb_007163_060--Hb_005322_050 Hb_007163_060--Hb_172257_010 Hb_004223_110 Hb_004223_110 Hb_007163_060--Hb_004223_110 Hb_003746_030 Hb_003746_030 Hb_007163_060--Hb_003746_030 Hb_000300_550 Hb_000300_550 Hb_007163_060--Hb_000300_550 Hb_007163_060--Hb_009449_060 Hb_005322_050--Hb_000300_550 Hb_000302_170 Hb_000302_170 Hb_005322_050--Hb_000302_170 Hb_005322_050--Hb_172257_010 Hb_027654_020 Hb_027654_020 Hb_005322_050--Hb_027654_020 Hb_000805_210 Hb_000805_210 Hb_083628_010--Hb_000805_210 Hb_001623_110 Hb_001623_110 Hb_083628_010--Hb_001623_110 Hb_083628_010--Hb_000836_300 Hb_012760_030 Hb_012760_030 Hb_083628_010--Hb_012760_030 Hb_009222_070 Hb_009222_070 Hb_083628_010--Hb_009222_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.26597 7.19375 11.9958 11.8325 5.33839 4.83182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.105 2.819 1.58898 5.53105 2.20471

CAGE analysis