Hb_164945_040

Information

Type -
Description -
Location Contig164945: 38591-43947
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13080g
description hypothetical protein
nr
ID XP_012065040.1
description PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5FVS8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13080g PE=4 SV=1
Gene Ontology
ID GO:0044238
description elongation factor 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15182: 39214-40248 , PASA_asmbl_15183: 41129-42655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164945_040 0.0 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
2 Hb_001096_100 0.1295559423 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003376_310 0.147321521 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
4 Hb_002301_380 0.1492874084 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
5 Hb_000836_120 0.1516597853 - - syntaxin, putative [Ricinus communis]
6 Hb_001638_040 0.161959389 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
7 Hb_000853_030 0.166436797 - - sucrose synthase 2 [Hevea brasiliensis]
8 Hb_000457_170 0.1728953115 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
9 Hb_001220_030 0.1732359993 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
10 Hb_005551_060 0.1749436447 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
11 Hb_146464_010 0.1758896375 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_000390_100 0.1789786866 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
13 Hb_000243_380 0.1792657327 - - PREDICTED: histone H1 [Jatropha curcas]
14 Hb_001902_190 0.1798533202 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
15 Hb_001268_390 0.1864820242 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
16 Hb_001564_080 0.1874823022 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
17 Hb_000003_220 0.1876117516 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
18 Hb_129204_060 0.1929296931 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
19 Hb_001205_030 0.1933609953 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
20 Hb_002745_010 0.1933944907 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]

Gene co-expression network

sample Hb_164945_040 Hb_164945_040 Hb_001096_100 Hb_001096_100 Hb_164945_040--Hb_001096_100 Hb_003376_310 Hb_003376_310 Hb_164945_040--Hb_003376_310 Hb_002301_380 Hb_002301_380 Hb_164945_040--Hb_002301_380 Hb_000836_120 Hb_000836_120 Hb_164945_040--Hb_000836_120 Hb_001638_040 Hb_001638_040 Hb_164945_040--Hb_001638_040 Hb_000853_030 Hb_000853_030 Hb_164945_040--Hb_000853_030 Hb_001096_100--Hb_002301_380 Hb_155396_010 Hb_155396_010 Hb_001096_100--Hb_155396_010 Hb_004218_090 Hb_004218_090 Hb_001096_100--Hb_004218_090 Hb_003125_030 Hb_003125_030 Hb_001096_100--Hb_003125_030 Hb_005725_060 Hb_005725_060 Hb_001096_100--Hb_005725_060 Hb_003376_310--Hb_001096_100 Hb_003376_310--Hb_000836_120 Hb_003376_310--Hb_000853_030 Hb_060237_020 Hb_060237_020 Hb_003376_310--Hb_060237_020 Hb_003376_310--Hb_001638_040 Hb_000390_100 Hb_000390_100 Hb_002301_380--Hb_000390_100 Hb_000856_180 Hb_000856_180 Hb_002301_380--Hb_000856_180 Hb_000003_220 Hb_000003_220 Hb_002301_380--Hb_000003_220 Hb_000925_160 Hb_000925_160 Hb_002301_380--Hb_000925_160 Hb_000227_060 Hb_000227_060 Hb_002301_380--Hb_000227_060 Hb_002273_050 Hb_002273_050 Hb_000836_120--Hb_002273_050 Hb_002235_240 Hb_002235_240 Hb_000836_120--Hb_002235_240 Hb_129204_060 Hb_129204_060 Hb_000836_120--Hb_129204_060 Hb_003849_260 Hb_003849_260 Hb_000836_120--Hb_003849_260 Hb_000215_410 Hb_000215_410 Hb_000836_120--Hb_000215_410 Hb_000836_120--Hb_001638_040 Hb_010831_020 Hb_010831_020 Hb_001638_040--Hb_010831_020 Hb_000540_120 Hb_000540_120 Hb_001638_040--Hb_000540_120 Hb_000449_050 Hb_000449_050 Hb_001638_040--Hb_000449_050 Hb_164010_070 Hb_164010_070 Hb_001638_040--Hb_164010_070 Hb_001638_040--Hb_000853_030 Hb_002739_150 Hb_002739_150 Hb_001638_040--Hb_002739_150 Hb_000853_030--Hb_164010_070 Hb_000853_030--Hb_000390_100 Hb_000932_070 Hb_000932_070 Hb_000853_030--Hb_000932_070 Hb_000853_030--Hb_002739_150 Hb_001396_260 Hb_001396_260 Hb_000853_030--Hb_001396_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.67921 16.4893 0.92009 3.4165 2.64911 4.5252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.82431 3.42396 3.03333 4.58147 0.278851

CAGE analysis