Hb_165100_010

Information

Type -
Description -
Location Contig165100: 269-808
Sequence    

Annotation

kegg
ID pda:103696607
description uncharacterized LOC103696607
nr
ID XP_008776509.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID A5B3J2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040272 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165100_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
2 Hb_085793_010 0.1130544578 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
3 Hb_003205_040 0.1151700951 - - epoxide hydrolase, putative [Ricinus communis]
4 Hb_000043_040 0.1513804125 - - CTV.19 [Citrus trifoliata]
5 Hb_066206_010 0.1865182382 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000574_290 0.2001167488 - - PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas]
7 Hb_028248_010 0.203248929 - - polyprotein [Oryza australiensis]
8 Hb_185839_010 0.213492076 - - -
9 Hb_012330_030 0.2171531348 - - conserved hypothetical protein [Ricinus communis]
10 Hb_020250_020 0.2241265499 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
11 Hb_007083_040 0.2268098243 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
12 Hb_026532_010 0.2268521739 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
13 Hb_001662_020 0.2276095499 - - PREDICTED: F-box protein SKIP23-like isoform X3 [Eucalyptus grandis]
14 Hb_011616_060 0.2276451609 - - PREDICTED: uncharacterized protein LOC105789623 [Gossypium raimondii]
15 Hb_090778_010 0.2277274648 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]
16 Hb_124540_020 0.2281520225 - - polyprotein [Citrus endogenous pararetrovirus]
17 Hb_010783_010 0.2301226222 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_001817_190 0.2301650615 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_001972_020 0.2302303593 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_006778_010 0.2304310016 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]

Gene co-expression network

sample Hb_165100_010 Hb_165100_010 Hb_085793_010 Hb_085793_010 Hb_165100_010--Hb_085793_010 Hb_003205_040 Hb_003205_040 Hb_165100_010--Hb_003205_040 Hb_000043_040 Hb_000043_040 Hb_165100_010--Hb_000043_040 Hb_066206_010 Hb_066206_010 Hb_165100_010--Hb_066206_010 Hb_000574_290 Hb_000574_290 Hb_165100_010--Hb_000574_290 Hb_028248_010 Hb_028248_010 Hb_165100_010--Hb_028248_010 Hb_085793_010--Hb_003205_040 Hb_085793_010--Hb_000043_040 Hb_085793_010--Hb_066206_010 Hb_085793_010--Hb_000574_290 Hb_085793_010--Hb_028248_010 Hb_003205_040--Hb_000043_040 Hb_003205_040--Hb_066206_010 Hb_003205_040--Hb_000574_290 Hb_003205_040--Hb_028248_010 Hb_000043_040--Hb_066206_010 Hb_000043_040--Hb_000574_290 Hb_000043_040--Hb_028248_010 Hb_066206_010--Hb_000574_290 Hb_066206_010--Hb_028248_010 Hb_000574_290--Hb_028248_010 Hb_011716_120 Hb_011716_120 Hb_028248_010--Hb_011716_120 Hb_017225_010 Hb_017225_010 Hb_028248_010--Hb_017225_010 Hb_011987_010 Hb_011987_010 Hb_028248_010--Hb_011987_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0512353 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0384928 0.354078

CAGE analysis