Hb_165350_010

Information

Type -
Description -
Location Contig165350: 5174-7174
Sequence    

Annotation

kegg
ID sbi:SORBI_01g039870
description SORBIDRAFT_01g039870, Sb01g039870; hypothetical protein
nr
ID CDM80064.1
description unnamed protein product [Triticum aestivum]
swissprot
ID Q9C660
description Proline-rich receptor-like protein kinase PERK10 OS=Arabidopsis thaliana GN=PERK10 PE=2 SV=2
trembl
ID A0A077RR69
description Chromosome 3B, genomic scaffold, cultivar Chinese Spring OS=Triticum aestivum GN=TRAES_3BF061500080CFD_c1 PE=4 SV=1
Gene Ontology
ID GO:0016772
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165350_010 0.0 - - unnamed protein product [Triticum aestivum]
2 Hb_000270_780 0.0878975764 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
3 Hb_000861_070 0.0926649782 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011612_010 0.0976034498 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
5 Hb_002508_020 0.0994458203 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
6 Hb_000592_080 0.101935293 - - PREDICTED: thymidylate kinase [Jatropha curcas]
7 Hb_012193_010 0.103233376 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_002701_080 0.1069882588 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
9 Hb_001252_080 0.1082394367 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
10 Hb_008643_060 0.1088213128 - - unnamed protein product [Coffea canephora]
11 Hb_001369_420 0.1105012866 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
12 Hb_010222_080 0.1115916379 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
13 Hb_000465_470 0.1117402242 - - unknown [Picea sitchensis]
14 Hb_140171_010 0.112099222 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
15 Hb_182026_010 0.1128851582 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
16 Hb_004204_080 0.1132634966 - - diacylglycerol kinase, theta, putative [Ricinus communis]
17 Hb_012654_010 0.1133292557 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
18 Hb_002997_100 0.1145756296 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
19 Hb_000406_040 0.1151839396 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
20 Hb_005730_030 0.115277954 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_165350_010 Hb_165350_010 Hb_000270_780 Hb_000270_780 Hb_165350_010--Hb_000270_780 Hb_000861_070 Hb_000861_070 Hb_165350_010--Hb_000861_070 Hb_011612_010 Hb_011612_010 Hb_165350_010--Hb_011612_010 Hb_002508_020 Hb_002508_020 Hb_165350_010--Hb_002508_020 Hb_000592_080 Hb_000592_080 Hb_165350_010--Hb_000592_080 Hb_012193_010 Hb_012193_010 Hb_165350_010--Hb_012193_010 Hb_156850_030 Hb_156850_030 Hb_000270_780--Hb_156850_030 Hb_001728_100 Hb_001728_100 Hb_000270_780--Hb_001728_100 Hb_004204_080 Hb_004204_080 Hb_000270_780--Hb_004204_080 Hb_008643_060 Hb_008643_060 Hb_000270_780--Hb_008643_060 Hb_001057_010 Hb_001057_010 Hb_000270_780--Hb_001057_010 Hb_004724_320 Hb_004724_320 Hb_000861_070--Hb_004724_320 Hb_002890_030 Hb_002890_030 Hb_000861_070--Hb_002890_030 Hb_075481_030 Hb_075481_030 Hb_000861_070--Hb_075481_030 Hb_000521_260 Hb_000521_260 Hb_000861_070--Hb_000521_260 Hb_000008_330 Hb_000008_330 Hb_000861_070--Hb_000008_330 Hb_004162_280 Hb_004162_280 Hb_000861_070--Hb_004162_280 Hb_002701_080 Hb_002701_080 Hb_011612_010--Hb_002701_080 Hb_000398_190 Hb_000398_190 Hb_011612_010--Hb_000398_190 Hb_001504_160 Hb_001504_160 Hb_011612_010--Hb_001504_160 Hb_012654_010 Hb_012654_010 Hb_011612_010--Hb_012654_010 Hb_011612_010--Hb_012193_010 Hb_011612_010--Hb_004162_280 Hb_002508_020--Hb_000592_080 Hb_000358_150 Hb_000358_150 Hb_002508_020--Hb_000358_150 Hb_002997_100 Hb_002997_100 Hb_002508_020--Hb_002997_100 Hb_001252_080 Hb_001252_080 Hb_002508_020--Hb_001252_080 Hb_000710_020 Hb_000710_020 Hb_002508_020--Hb_000710_020 Hb_008864_110 Hb_008864_110 Hb_000592_080--Hb_008864_110 Hb_002400_470 Hb_002400_470 Hb_000592_080--Hb_002400_470 Hb_001348_050 Hb_001348_050 Hb_000592_080--Hb_001348_050 Hb_001047_030 Hb_001047_030 Hb_000592_080--Hb_001047_030 Hb_000976_320 Hb_000976_320 Hb_000592_080--Hb_000976_320 Hb_000592_080--Hb_000710_020 Hb_000057_040 Hb_000057_040 Hb_012193_010--Hb_000057_040 Hb_001047_100 Hb_001047_100 Hb_012193_010--Hb_001047_100 Hb_000099_240 Hb_000099_240 Hb_012193_010--Hb_000099_240 Hb_004198_010 Hb_004198_010 Hb_012193_010--Hb_004198_010 Hb_105386_010 Hb_105386_010 Hb_012193_010--Hb_105386_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.27639 2.38668 1.76111 2.26389 7.48493 5.01527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64094 3.09596 4.25338 2.04787 0.637026

CAGE analysis