Hb_165402_010

Information

Type -
Description -
Location Contig165402: 80-464
Sequence    

Annotation

kegg
ID cmo:103497868
description cullin-1
nr
ID XP_009780620.1
description PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
swissprot
ID Q94AH6
description Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
trembl
ID A0A0A0KCC8
description Uncharacterized protein OS=Cucumis sativus GN=Csa_6G197230 PE=3 SV=1
Gene Ontology
ID GO:0031461
description cullin-1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165402_010 0.0 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
2 Hb_181441_010 0.116777971 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
3 Hb_106688_010 0.1167967038 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
4 Hb_075764_010 0.1176477315 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
5 Hb_000230_180 0.1262226321 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
6 Hb_077573_010 0.1296976668 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002611_020 0.1334163105 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
8 Hb_009247_010 0.1364815321 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
9 Hb_102591_010 0.1373071173 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
10 Hb_088163_010 0.1414336346 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
11 Hb_013358_090 0.1419593199 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
12 Hb_005170_010 0.1422438214 - - -
13 Hb_181328_010 0.1497383281 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_099878_050 0.1514556666 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
15 Hb_004040_030 0.1531485927 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
16 Hb_000077_290 0.1545577698 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002122_010 0.1575467009 - - -
18 Hb_007441_090 0.1582461335 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
19 Hb_060391_010 0.1606103183 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_100137_010 0.1610194707 - - hypothetical protein JCGZ_17848 [Jatropha curcas]

Gene co-expression network

sample Hb_165402_010 Hb_165402_010 Hb_181441_010 Hb_181441_010 Hb_165402_010--Hb_181441_010 Hb_106688_010 Hb_106688_010 Hb_165402_010--Hb_106688_010 Hb_075764_010 Hb_075764_010 Hb_165402_010--Hb_075764_010 Hb_000230_180 Hb_000230_180 Hb_165402_010--Hb_000230_180 Hb_077573_010 Hb_077573_010 Hb_165402_010--Hb_077573_010 Hb_002611_020 Hb_002611_020 Hb_165402_010--Hb_002611_020 Hb_050912_010 Hb_050912_010 Hb_181441_010--Hb_050912_010 Hb_181328_010 Hb_181328_010 Hb_181441_010--Hb_181328_010 Hb_009247_010 Hb_009247_010 Hb_181441_010--Hb_009247_010 Hb_181441_010--Hb_077573_010 Hb_006541_040 Hb_006541_040 Hb_181441_010--Hb_006541_040 Hb_007441_090 Hb_007441_090 Hb_106688_010--Hb_007441_090 Hb_106688_010--Hb_077573_010 Hb_040747_010 Hb_040747_010 Hb_106688_010--Hb_040747_010 Hb_145317_010 Hb_145317_010 Hb_106688_010--Hb_145317_010 Hb_106688_010--Hb_009247_010 Hb_088163_010 Hb_088163_010 Hb_075764_010--Hb_088163_010 Hb_075764_010--Hb_000230_180 Hb_099878_050 Hb_099878_050 Hb_075764_010--Hb_099878_050 Hb_075764_010--Hb_002611_020 Hb_002122_010 Hb_002122_010 Hb_075764_010--Hb_002122_010 Hb_000230_180--Hb_002611_020 Hb_005170_010 Hb_005170_010 Hb_000230_180--Hb_005170_010 Hb_086639_080 Hb_086639_080 Hb_000230_180--Hb_086639_080 Hb_002498_050 Hb_002498_050 Hb_000230_180--Hb_002498_050 Hb_000696_010 Hb_000696_010 Hb_000230_180--Hb_000696_010 Hb_012506_010 Hb_012506_010 Hb_077573_010--Hb_012506_010 Hb_077573_010--Hb_099878_050 Hb_077573_010--Hb_009247_010 Hb_002611_020--Hb_181328_010 Hb_002400_330 Hb_002400_330 Hb_002611_020--Hb_002400_330 Hb_002611_020--Hb_002122_010 Hb_002611_020--Hb_005170_010 Hb_002611_020--Hb_000696_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.3466 70.2644 63.3505 254.036 50.6053 160.729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.709 25.3554 21.8013 81.559 39.15

CAGE analysis