Hb_165928_020

Information

Type -
Description -
Location Contig165928: 5934-8629
Sequence    

Annotation

kegg
ID tcc:TCM_012794
description Zinc finger (Ran-binding) family protein, putative isoform 2
nr
ID XP_012088559.1
description PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
swissprot
ID Q8S9K3
description Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2
trembl
ID A0A067JIZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27101 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15273: 7233-8511
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165928_020 0.0 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
2 Hb_000120_920 0.0425312431 - - poly(A) polymerase, putative [Ricinus communis]
3 Hb_004841_010 0.0575504909 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
4 Hb_023386_020 0.0607671351 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
5 Hb_016172_020 0.0636963993 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
6 Hb_004412_010 0.0679981263 - - -
7 Hb_000062_430 0.0700106285 - - PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
8 Hb_008643_210 0.0706461916 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
9 Hb_023386_040 0.0737165592 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
10 Hb_110291_010 0.0739421188 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004100_080 0.0748603741 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004963_030 0.0757243032 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_000836_440 0.0777998363 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_007575_050 0.0781773954 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
15 Hb_030736_100 0.079267173 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000820_170 0.0794380182 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
17 Hb_154745_010 0.0804634218 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_156973_010 0.081312186 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000926_190 0.0814710071 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
20 Hb_007075_040 0.0816453225 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_165928_020 Hb_165928_020 Hb_000120_920 Hb_000120_920 Hb_165928_020--Hb_000120_920 Hb_004841_010 Hb_004841_010 Hb_165928_020--Hb_004841_010 Hb_023386_020 Hb_023386_020 Hb_165928_020--Hb_023386_020 Hb_016172_020 Hb_016172_020 Hb_165928_020--Hb_016172_020 Hb_004412_010 Hb_004412_010 Hb_165928_020--Hb_004412_010 Hb_000062_430 Hb_000062_430 Hb_165928_020--Hb_000062_430 Hb_023386_040 Hb_023386_040 Hb_000120_920--Hb_023386_040 Hb_000120_920--Hb_000062_430 Hb_000120_920--Hb_004412_010 Hb_003438_050 Hb_003438_050 Hb_000120_920--Hb_003438_050 Hb_003025_110 Hb_003025_110 Hb_000120_920--Hb_003025_110 Hb_004841_010--Hb_023386_020 Hb_008643_210 Hb_008643_210 Hb_004841_010--Hb_008643_210 Hb_004841_010--Hb_016172_020 Hb_000856_110 Hb_000856_110 Hb_004841_010--Hb_000856_110 Hb_004100_080 Hb_004100_080 Hb_004841_010--Hb_004100_080 Hb_023386_020--Hb_004100_080 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_002518_280 Hb_002518_280 Hb_023386_020--Hb_002518_280 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_000879_200 Hb_000879_200 Hb_023386_020--Hb_000879_200 Hb_008406_200 Hb_008406_200 Hb_016172_020--Hb_008406_200 Hb_016172_020--Hb_008643_210 Hb_004143_060 Hb_004143_060 Hb_016172_020--Hb_004143_060 Hb_010618_010 Hb_010618_010 Hb_016172_020--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_016172_020--Hb_001409_020 Hb_001248_060 Hb_001248_060 Hb_016172_020--Hb_001248_060 Hb_007575_050 Hb_007575_050 Hb_004412_010--Hb_007575_050 Hb_004412_010--Hb_023386_020 Hb_003878_070 Hb_003878_070 Hb_004412_010--Hb_003878_070 Hb_016898_010 Hb_016898_010 Hb_004412_010--Hb_016898_010 Hb_004412_010--Hb_023386_040 Hb_002737_070 Hb_002737_070 Hb_000062_430--Hb_002737_070 Hb_000062_430--Hb_004412_010 Hb_000062_430--Hb_004841_010 Hb_000093_160 Hb_000093_160 Hb_000062_430--Hb_000093_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7879 8.06549 9.3828 6.68527 10.8393 19.5314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.30407 11.6393 8.51168 8.22928 11.0697

CAGE analysis