Hb_165928_030

Information

Type -
Description -
Location Contig165928: 10789-21073
Sequence    

Annotation

kegg
ID rcu:RCOM_0566130
description hypothetical protein
nr
ID XP_002530479.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q56Y52
description Protection of telomeres protein 1a OS=Arabidopsis thaliana GN=POT1A PE=1 SV=1
trembl
ID B9SWW0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0566130 PE=4 SV=1
Gene Ontology
ID GO:0000784
description protection of telomeres protein 1b-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15274: 10765-20928 , PASA_asmbl_15275: 10765-20928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165928_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002000_080 0.0635720513 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
3 Hb_003294_070 0.0670098899 - - hypothetical protein RCOM_1714550 [Ricinus communis]
4 Hb_008725_230 0.0692742067 - - PREDICTED: CTP synthase [Jatropha curcas]
5 Hb_073973_100 0.0725658884 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
6 Hb_001584_120 0.072998729 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
7 Hb_002303_070 0.07343979 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
8 Hb_002078_350 0.0753412749 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
9 Hb_000015_040 0.0768186365 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
10 Hb_001252_120 0.0775583121 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
11 Hb_002481_080 0.079023221 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
12 Hb_000215_110 0.0798849139 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
13 Hb_006831_140 0.0802283073 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_002232_410 0.080965525 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
15 Hb_001357_250 0.082822443 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
16 Hb_004324_130 0.0828493103 - - polypyrimidine tract binding protein, putative [Ricinus communis]
17 Hb_001599_040 0.0834927628 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
18 Hb_000028_180 0.0839408102 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
19 Hb_000948_160 0.0846220459 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
20 Hb_001016_120 0.0854994302 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_165928_030 Hb_165928_030 Hb_002000_080 Hb_002000_080 Hb_165928_030--Hb_002000_080 Hb_003294_070 Hb_003294_070 Hb_165928_030--Hb_003294_070 Hb_008725_230 Hb_008725_230 Hb_165928_030--Hb_008725_230 Hb_073973_100 Hb_073973_100 Hb_165928_030--Hb_073973_100 Hb_001584_120 Hb_001584_120 Hb_165928_030--Hb_001584_120 Hb_002303_070 Hb_002303_070 Hb_165928_030--Hb_002303_070 Hb_011671_180 Hb_011671_180 Hb_002000_080--Hb_011671_180 Hb_002481_080 Hb_002481_080 Hb_002000_080--Hb_002481_080 Hb_002000_080--Hb_073973_100 Hb_006907_130 Hb_006907_130 Hb_002000_080--Hb_006907_130 Hb_002000_080--Hb_003294_070 Hb_000181_400 Hb_000181_400 Hb_003294_070--Hb_000181_400 Hb_009079_030 Hb_009079_030 Hb_003294_070--Hb_009079_030 Hb_004324_130 Hb_004324_130 Hb_003294_070--Hb_004324_130 Hb_000181_320 Hb_000181_320 Hb_003294_070--Hb_000181_320 Hb_000003_320 Hb_000003_320 Hb_003294_070--Hb_000003_320 Hb_002232_410 Hb_002232_410 Hb_008725_230--Hb_002232_410 Hb_001359_050 Hb_001359_050 Hb_008725_230--Hb_001359_050 Hb_001205_240 Hb_001205_240 Hb_008725_230--Hb_001205_240 Hb_008725_230--Hb_004324_130 Hb_000185_030 Hb_000185_030 Hb_008725_230--Hb_000185_030 Hb_000028_370 Hb_000028_370 Hb_008725_230--Hb_000028_370 Hb_003376_330 Hb_003376_330 Hb_073973_100--Hb_003376_330 Hb_000270_490 Hb_000270_490 Hb_073973_100--Hb_000270_490 Hb_000556_120 Hb_000556_120 Hb_073973_100--Hb_000556_120 Hb_023732_030 Hb_023732_030 Hb_073973_100--Hb_023732_030 Hb_001500_140 Hb_001500_140 Hb_001584_120--Hb_001500_140 Hb_001635_090 Hb_001635_090 Hb_001584_120--Hb_001635_090 Hb_000603_150 Hb_000603_150 Hb_001584_120--Hb_000603_150 Hb_001252_120 Hb_001252_120 Hb_001584_120--Hb_001252_120 Hb_000083_120 Hb_000083_120 Hb_001584_120--Hb_000083_120 Hb_028227_070 Hb_028227_070 Hb_001584_120--Hb_028227_070 Hb_000215_110 Hb_000215_110 Hb_002303_070--Hb_000215_110 Hb_003226_140 Hb_003226_140 Hb_002303_070--Hb_003226_140 Hb_001599_040 Hb_001599_040 Hb_002303_070--Hb_001599_040 Hb_005730_120 Hb_005730_120 Hb_002303_070--Hb_005730_120 Hb_005357_080 Hb_005357_080 Hb_002303_070--Hb_005357_080 Hb_005271_220 Hb_005271_220 Hb_002303_070--Hb_005271_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54132 4.23228 4.22846 4.92005 3.35077 6.45667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.1589 6.55602 5.39056 7.89684 3.82929

CAGE analysis