Hb_166155_010

Information

Type -
Description -
Location Contig166155: 9186-10277
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15760g
description senescence-specific family protein
nr
ID XP_012070132.1
description PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID A0A067L701
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03410 PE=4 SV=1
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166155_010 0.0 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
2 Hb_000625_040 0.1148097628 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
3 Hb_003376_150 0.1215864087 - - PREDICTED: peroxidase 21 [Jatropha curcas]
4 Hb_005048_080 0.1371350093 - - PREDICTED: PAP-specific phosphatase HAL2-like [Jatropha curcas]
5 Hb_009786_010 0.1428137595 - - Phosphoprotein phosphatase [Theobroma cacao]
6 Hb_007305_040 0.144368994 - - Nodulin-26, putative [Ricinus communis]
7 Hb_000398_200 0.1458068321 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
8 Hb_006052_040 0.1505044131 - - pyruvate decarboxylase [Hevea brasiliensis]
9 Hb_004122_020 0.1536074576 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
10 Hb_041290_030 0.1544904396 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
11 Hb_004531_010 0.1548324809 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
12 Hb_000117_110 0.1621342304 - - transferase, putative [Ricinus communis]
13 Hb_000181_080 0.1636981705 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
14 Hb_002890_060 0.1664341758 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
15 Hb_008550_030 0.1665552563 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
16 Hb_011925_010 0.1683128878 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
17 Hb_081686_030 0.1707063854 - - hypothetical protein MIMGU_mgv11b016770mg [Erythranthe guttata]
18 Hb_004712_140 0.1718424837 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
19 Hb_002236_020 0.1725866949 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
20 Hb_000260_130 0.1746921622 - - Acid phosphatase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_166155_010 Hb_166155_010 Hb_000625_040 Hb_000625_040 Hb_166155_010--Hb_000625_040 Hb_003376_150 Hb_003376_150 Hb_166155_010--Hb_003376_150 Hb_005048_080 Hb_005048_080 Hb_166155_010--Hb_005048_080 Hb_009786_010 Hb_009786_010 Hb_166155_010--Hb_009786_010 Hb_007305_040 Hb_007305_040 Hb_166155_010--Hb_007305_040 Hb_000398_200 Hb_000398_200 Hb_166155_010--Hb_000398_200 Hb_000625_040--Hb_007305_040 Hb_000625_040--Hb_003376_150 Hb_002890_060 Hb_002890_060 Hb_000625_040--Hb_002890_060 Hb_000123_310 Hb_000123_310 Hb_000625_040--Hb_000123_310 Hb_004122_020 Hb_004122_020 Hb_000625_040--Hb_004122_020 Hb_006052_040 Hb_006052_040 Hb_003376_150--Hb_006052_040 Hb_003376_150--Hb_000398_200 Hb_003376_150--Hb_009786_010 Hb_003376_150--Hb_005048_080 Hb_000029_180 Hb_000029_180 Hb_005048_080--Hb_000029_180 Hb_003176_020 Hb_003176_020 Hb_005048_080--Hb_003176_020 Hb_000286_180 Hb_000286_180 Hb_005048_080--Hb_000286_180 Hb_030370_070 Hb_030370_070 Hb_005048_080--Hb_030370_070 Hb_000072_160 Hb_000072_160 Hb_009786_010--Hb_000072_160 Hb_009786_010--Hb_003176_020 Hb_014361_130 Hb_014361_130 Hb_009786_010--Hb_014361_130 Hb_002968_010 Hb_002968_010 Hb_009786_010--Hb_002968_010 Hb_081686_030 Hb_081686_030 Hb_009786_010--Hb_081686_030 Hb_002236_020 Hb_002236_020 Hb_007305_040--Hb_002236_020 Hb_000347_370 Hb_000347_370 Hb_007305_040--Hb_000347_370 Hb_024857_010 Hb_024857_010 Hb_007305_040--Hb_024857_010 Hb_004531_010 Hb_004531_010 Hb_007305_040--Hb_004531_010 Hb_000260_130 Hb_000260_130 Hb_007305_040--Hb_000260_130 Hb_001677_130 Hb_001677_130 Hb_000398_200--Hb_001677_130 Hb_000117_110 Hb_000117_110 Hb_000398_200--Hb_000117_110 Hb_004712_140 Hb_004712_140 Hb_000398_200--Hb_004712_140 Hb_007328_010 Hb_007328_010 Hb_000398_200--Hb_007328_010 Hb_011925_010 Hb_011925_010 Hb_000398_200--Hb_011925_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0198799 7.49629 0.2297 1.58807 0 0.0174904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0715241 0.13237 0.645877 0.956757

CAGE analysis