Hb_166210_010

Information

Type -
Description -
Location Contig166210: 129-362
Sequence    

Annotation

kegg
ID rcu:RCOM_1353860
description hypothetical protein
nr
ID XP_002519470.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S0F1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1353860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166210_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_036731_010 0.0185298341 - - -
3 Hb_005714_120 0.0454986618 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_001514_140 0.0671826667 - - -
5 Hb_018746_010 0.0755882808 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
6 Hb_002121_070 0.0757960251 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002233_050 0.0888751294 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
8 Hb_043960_010 0.1008914281 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000362_100 0.1030707191 - - -
10 Hb_006449_060 0.1088177186 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
11 Hb_010532_010 0.1094280332 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
12 Hb_005207_010 0.1109025261 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
13 Hb_002762_010 0.1198068829 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
14 Hb_005021_040 0.1283918243 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
15 Hb_007632_140 0.1308554133 - - -
16 Hb_002876_100 0.1331221448 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
17 Hb_006415_010 0.1418895368 - - -
18 Hb_019135_010 0.1422444433 - - -
19 Hb_002188_050 0.1507003505 - - PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]
20 Hb_005337_010 0.1610703844 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]

Gene co-expression network

sample Hb_166210_010 Hb_166210_010 Hb_036731_010 Hb_036731_010 Hb_166210_010--Hb_036731_010 Hb_005714_120 Hb_005714_120 Hb_166210_010--Hb_005714_120 Hb_001514_140 Hb_001514_140 Hb_166210_010--Hb_001514_140 Hb_018746_010 Hb_018746_010 Hb_166210_010--Hb_018746_010 Hb_002121_070 Hb_002121_070 Hb_166210_010--Hb_002121_070 Hb_002233_050 Hb_002233_050 Hb_166210_010--Hb_002233_050 Hb_036731_010--Hb_005714_120 Hb_036731_010--Hb_002121_070 Hb_036731_010--Hb_001514_140 Hb_036731_010--Hb_018746_010 Hb_000362_100 Hb_000362_100 Hb_036731_010--Hb_000362_100 Hb_005714_120--Hb_002121_070 Hb_005714_120--Hb_000362_100 Hb_005714_120--Hb_001514_140 Hb_005021_040 Hb_005021_040 Hb_005714_120--Hb_005021_040 Hb_001514_140--Hb_018746_010 Hb_043960_010 Hb_043960_010 Hb_001514_140--Hb_043960_010 Hb_002762_010 Hb_002762_010 Hb_001514_140--Hb_002762_010 Hb_018746_010--Hb_002762_010 Hb_018746_010--Hb_043960_010 Hb_018746_010--Hb_005714_120 Hb_002121_070--Hb_000362_100 Hb_007632_140 Hb_007632_140 Hb_002121_070--Hb_007632_140 Hb_019135_010 Hb_019135_010 Hb_002121_070--Hb_019135_010 Hb_005207_010 Hb_005207_010 Hb_002233_050--Hb_005207_010 Hb_006449_060 Hb_006449_060 Hb_002233_050--Hb_006449_060 Hb_010532_010 Hb_010532_010 Hb_002233_050--Hb_010532_010 Hb_002233_050--Hb_036731_010 Hb_000649_260 Hb_000649_260 Hb_002233_050--Hb_000649_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.366356 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.292706 0.801548

CAGE analysis