Hb_166222_010

Information

Type -
Description -
Location Contig166222: 504-1235
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08350g
description POPTRDRAFT_778316; hypothetical protein
nr
ID XP_002323787.1
description hypothetical protein POPTR_0017s08350g [Populus trichocarpa]
swissprot
ID B6SFA4
description Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1
trembl
ID B9IJJ0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08350g PE=4 SV=1
Gene Ontology
ID GO:0004386
description p-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166222_010 0.0 - - hypothetical protein POPTR_0017s08350g [Populus trichocarpa]
2 Hb_002271_030 0.0830028995 - - Vacuolar protein sorting protein, putative [Ricinus communis]
3 Hb_003226_180 0.0830387154 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
4 Hb_003376_400 0.0840452185 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
5 Hb_012098_080 0.0879063601 - - KOM, putative [Ricinus communis]
6 Hb_000032_280 0.0924056279 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
7 Hb_000111_420 0.0955360084 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Populus euphratica]
8 Hb_007317_140 0.0963436636 - - expressed protein, putative [Ricinus communis]
9 Hb_009467_060 0.0964617732 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
10 Hb_001959_210 0.0978313775 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
11 Hb_006400_060 0.099797581 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
12 Hb_010710_070 0.1009145764 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
13 Hb_001289_080 0.1020970757 - - PREDICTED: protein YLS9-like [Jatropha curcas]
14 Hb_002909_050 0.1023839036 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004410_030 0.1030805294 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_007044_140 0.104157019 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
17 Hb_007632_240 0.1049962659 - - transporter, putative [Ricinus communis]
18 Hb_000028_480 0.1053119333 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
19 Hb_003052_150 0.1060133578 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
20 Hb_003847_130 0.1065333873 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]

Gene co-expression network

sample Hb_166222_010 Hb_166222_010 Hb_002271_030 Hb_002271_030 Hb_166222_010--Hb_002271_030 Hb_003226_180 Hb_003226_180 Hb_166222_010--Hb_003226_180 Hb_003376_400 Hb_003376_400 Hb_166222_010--Hb_003376_400 Hb_012098_080 Hb_012098_080 Hb_166222_010--Hb_012098_080 Hb_000032_280 Hb_000032_280 Hb_166222_010--Hb_000032_280 Hb_000111_420 Hb_000111_420 Hb_166222_010--Hb_000111_420 Hb_004410_030 Hb_004410_030 Hb_002271_030--Hb_004410_030 Hb_000011_200 Hb_000011_200 Hb_002271_030--Hb_000011_200 Hb_003025_110 Hb_003025_110 Hb_002271_030--Hb_003025_110 Hb_000225_040 Hb_000225_040 Hb_002271_030--Hb_000225_040 Hb_030736_100 Hb_030736_100 Hb_002271_030--Hb_030736_100 Hb_001493_030 Hb_001493_030 Hb_002271_030--Hb_001493_030 Hb_000329_470 Hb_000329_470 Hb_003226_180--Hb_000329_470 Hb_003158_010 Hb_003158_010 Hb_003226_180--Hb_003158_010 Hb_003106_060 Hb_003106_060 Hb_003226_180--Hb_003106_060 Hb_003226_180--Hb_003376_400 Hb_000373_280 Hb_000373_280 Hb_003226_180--Hb_000373_280 Hb_006913_030 Hb_006913_030 Hb_003226_180--Hb_006913_030 Hb_000976_300 Hb_000976_300 Hb_003376_400--Hb_000976_300 Hb_004143_130 Hb_004143_130 Hb_003376_400--Hb_004143_130 Hb_000377_090 Hb_000377_090 Hb_003376_400--Hb_000377_090 Hb_001449_040 Hb_001449_040 Hb_003376_400--Hb_001449_040 Hb_105123_010 Hb_105123_010 Hb_012098_080--Hb_105123_010 Hb_155159_030 Hb_155159_030 Hb_012098_080--Hb_155159_030 Hb_002496_010 Hb_002496_010 Hb_012098_080--Hb_002496_010 Hb_001301_100 Hb_001301_100 Hb_012098_080--Hb_001301_100 Hb_000922_410 Hb_000922_410 Hb_012098_080--Hb_000922_410 Hb_007632_240 Hb_007632_240 Hb_000032_280--Hb_007632_240 Hb_000032_280--Hb_004410_030 Hb_003847_130 Hb_003847_130 Hb_000032_280--Hb_003847_130 Hb_001473_180 Hb_001473_180 Hb_000032_280--Hb_001473_180 Hb_001289_080 Hb_001289_080 Hb_000032_280--Hb_001289_080 Hb_012733_030 Hb_012733_030 Hb_000032_280--Hb_012733_030 Hb_012035_050 Hb_012035_050 Hb_000111_420--Hb_012035_050 Hb_002188_120 Hb_002188_120 Hb_000111_420--Hb_002188_120 Hb_000111_420--Hb_105123_010 Hb_000111_420--Hb_155159_030 Hb_000111_420--Hb_012098_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.18439 2.05467 1.91542 1.67693 5.79953 5.25371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.0834 3.25793 4.45287 5.32911 5.11051

CAGE analysis