Hb_166480_010

Information

Type -
Description -
Location Contig166480: 2-373
Sequence    

Annotation

kegg
ID cmo:103492542
description peptidyl-tRNA hydrolase, mitochondrial-like
nr
ID XP_008451165.1
description PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
swissprot
ID Q6NLS8
description Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1
trembl
ID A0A067L0Y8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01880 PE=3 SV=1
Gene Ontology
ID GO:0004045
description peptidyl-trna mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166480_010 0.0 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
2 Hb_002482_060 0.1175249183 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
3 Hb_001396_250 0.1198548704 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
4 Hb_000120_190 0.1259080935 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
5 Hb_000015_070 0.1270778383 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
6 Hb_007763_050 0.1270883384 - - hypothetical protein L484_012752 [Morus notabilis]
7 Hb_005085_030 0.1320914676 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
8 Hb_010504_030 0.1371730908 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
9 Hb_002784_070 0.1389084091 - - BnaUnng01470D [Brassica napus]
10 Hb_010368_030 0.1420114888 - - BnaA07g35570D [Brassica napus]
11 Hb_007188_020 0.1420337594 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
12 Hb_000001_040 0.1423870241 - - unnamed protein product [Coffea canephora]
13 Hb_000127_090 0.1431665358 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006487_060 0.1457524874 - - Defective in cullin neddylation protein, putative [Ricinus communis]
15 Hb_175976_010 0.1459081536 - - -
16 Hb_000265_130 0.1476563164 - - -
17 Hb_007545_050 0.153388361 - - -
18 Hb_008221_110 0.154878306 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
19 Hb_152554_010 0.1572715731 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
20 Hb_106005_010 0.1579382661 - - EG5651 [Manihot esculenta]

Gene co-expression network

sample Hb_166480_010 Hb_166480_010 Hb_002482_060 Hb_002482_060 Hb_166480_010--Hb_002482_060 Hb_001396_250 Hb_001396_250 Hb_166480_010--Hb_001396_250 Hb_000120_190 Hb_000120_190 Hb_166480_010--Hb_000120_190 Hb_000015_070 Hb_000015_070 Hb_166480_010--Hb_000015_070 Hb_007763_050 Hb_007763_050 Hb_166480_010--Hb_007763_050 Hb_005085_030 Hb_005085_030 Hb_166480_010--Hb_005085_030 Hb_002482_060--Hb_000120_190 Hb_005731_140 Hb_005731_140 Hb_002482_060--Hb_005731_140 Hb_006198_090 Hb_006198_090 Hb_002482_060--Hb_006198_090 Hb_106005_010 Hb_106005_010 Hb_002482_060--Hb_106005_010 Hb_007763_060 Hb_007763_060 Hb_002482_060--Hb_007763_060 Hb_001396_250--Hb_000015_070 Hb_011214_100 Hb_011214_100 Hb_001396_250--Hb_011214_100 Hb_012675_080 Hb_012675_080 Hb_001396_250--Hb_012675_080 Hb_014050_010 Hb_014050_010 Hb_001396_250--Hb_014050_010 Hb_002784_070 Hb_002784_070 Hb_001396_250--Hb_002784_070 Hb_010368_030 Hb_010368_030 Hb_000120_190--Hb_010368_030 Hb_175976_010 Hb_175976_010 Hb_000120_190--Hb_175976_010 Hb_029142_020 Hb_029142_020 Hb_000120_190--Hb_029142_020 Hb_000120_190--Hb_006198_090 Hb_003371_170 Hb_003371_170 Hb_000015_070--Hb_003371_170 Hb_108227_010 Hb_108227_010 Hb_000015_070--Hb_108227_010 Hb_000015_070--Hb_011214_100 Hb_000015_070--Hb_012675_080 Hb_002168_010 Hb_002168_010 Hb_007763_050--Hb_002168_010 Hb_007763_050--Hb_010368_030 Hb_007763_050--Hb_000015_070 Hb_007763_050--Hb_001396_250 Hb_007763_050--Hb_175976_010 Hb_005679_070 Hb_005679_070 Hb_005085_030--Hb_005679_070 Hb_004060_030 Hb_004060_030 Hb_005085_030--Hb_004060_030 Hb_152554_010 Hb_152554_010 Hb_005085_030--Hb_152554_010 Hb_006663_090 Hb_006663_090 Hb_005085_030--Hb_006663_090 Hb_007188_020 Hb_007188_020 Hb_005085_030--Hb_007188_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.75966 1.19568 2.3572 28.5531 3.85518 61.1949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3192 20.3398 6.81485 3.862 2.65536

CAGE analysis