Hb_166646_010

Information

Type -
Description -
Location Contig166646: 1652-4046
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22200g
description POPTRDRAFT_1092290; hypothetical protein
nr
ID XP_002316331.1
description hypothetical protein POPTR_0010s22200g [Populus trichocarpa]
swissprot
ID O80952
description CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=PGPS1 PE=1 SV=1
trembl
ID B9HTZ8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22200g PE=3 SV=1
Gene Ontology
ID GO:0005739
description cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15372: 2492-2595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166646_010 0.0 - - hypothetical protein POPTR_0010s22200g [Populus trichocarpa]
2 Hb_000280_080 0.100920615 - - hypothetical protein JCGZ_13377 [Jatropha curcas]
3 Hb_000049_310 0.1105005631 - - Myosin-J heavy chain, partial [Glycine soja]
4 Hb_002620_010 0.1111991382 - - hypothetical protein POPTR_0004s18130g [Populus trichocarpa]
5 Hb_000061_460 0.1122922616 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
6 Hb_001892_020 0.1204922282 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
7 Hb_000291_110 0.1263591026 - - eukaryotic translation initiation factor [Hevea brasiliensis]
8 Hb_000061_420 0.1277415483 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
9 Hb_000676_110 0.1315000801 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
10 Hb_007813_040 0.1326957561 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
11 Hb_005731_130 0.1346351822 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
12 Hb_143629_210 0.1361611473 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
13 Hb_003976_030 0.13636227 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
14 Hb_000318_190 0.1369072406 - - hypothetical protein JCGZ_04889 [Jatropha curcas]
15 Hb_089032_040 0.1375979334 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
16 Hb_004204_170 0.1380573052 - - synaptosomal associated protein, putative [Ricinus communis]
17 Hb_000009_320 0.1393926061 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66631 [Jatropha curcas]
18 Hb_003058_190 0.1404834252 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
19 Hb_003680_200 0.1408154574 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
20 Hb_002830_030 0.1423293694 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_166646_010 Hb_166646_010 Hb_000280_080 Hb_000280_080 Hb_166646_010--Hb_000280_080 Hb_000049_310 Hb_000049_310 Hb_166646_010--Hb_000049_310 Hb_002620_010 Hb_002620_010 Hb_166646_010--Hb_002620_010 Hb_000061_460 Hb_000061_460 Hb_166646_010--Hb_000061_460 Hb_001892_020 Hb_001892_020 Hb_166646_010--Hb_001892_020 Hb_000291_110 Hb_000291_110 Hb_166646_010--Hb_000291_110 Hb_000280_080--Hb_000061_460 Hb_003976_030 Hb_003976_030 Hb_000280_080--Hb_003976_030 Hb_000280_080--Hb_001892_020 Hb_000009_320 Hb_000009_320 Hb_000280_080--Hb_000009_320 Hb_000280_080--Hb_000049_310 Hb_004907_110 Hb_004907_110 Hb_000280_080--Hb_004907_110 Hb_000049_310--Hb_000009_320 Hb_001956_200 Hb_001956_200 Hb_000049_310--Hb_001956_200 Hb_000049_310--Hb_004907_110 Hb_000049_310--Hb_000061_460 Hb_012325_020 Hb_012325_020 Hb_000049_310--Hb_012325_020 Hb_007813_040 Hb_007813_040 Hb_002620_010--Hb_007813_040 Hb_000808_270 Hb_000808_270 Hb_002620_010--Hb_000808_270 Hb_000318_190 Hb_000318_190 Hb_002620_010--Hb_000318_190 Hb_003175_010 Hb_003175_010 Hb_002620_010--Hb_003175_010 Hb_143629_210 Hb_143629_210 Hb_002620_010--Hb_143629_210 Hb_000030_300 Hb_000030_300 Hb_002620_010--Hb_000030_300 Hb_003058_190 Hb_003058_190 Hb_000061_460--Hb_003058_190 Hb_005731_130 Hb_005731_130 Hb_000061_460--Hb_005731_130 Hb_000260_270 Hb_000260_270 Hb_000061_460--Hb_000260_270 Hb_089032_040 Hb_089032_040 Hb_000061_460--Hb_089032_040 Hb_004994_220 Hb_004994_220 Hb_000061_460--Hb_004994_220 Hb_001892_020--Hb_004907_110 Hb_007532_030 Hb_007532_030 Hb_001892_020--Hb_007532_030 Hb_002631_060 Hb_002631_060 Hb_001892_020--Hb_002631_060 Hb_001178_140 Hb_001178_140 Hb_001892_020--Hb_001178_140 Hb_010883_090 Hb_010883_090 Hb_001892_020--Hb_010883_090 Hb_000062_240 Hb_000062_240 Hb_000291_110--Hb_000062_240 Hb_001789_090 Hb_001789_090 Hb_000291_110--Hb_001789_090 Hb_181235_010 Hb_181235_010 Hb_000291_110--Hb_181235_010 Hb_004837_040 Hb_004837_040 Hb_000291_110--Hb_004837_040 Hb_003750_080 Hb_003750_080 Hb_000291_110--Hb_003750_080 Hb_000061_420 Hb_000061_420 Hb_000291_110--Hb_000061_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04777 1.29893 1.08907 1.08972 2.2866 1.51906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.5229 1.13064 3.07402 1.51757 0.262012

CAGE analysis