Hb_166718_010

Information

Type -
Description -
Location Contig166718: 1580-3033
Sequence    

Annotation

kegg
ID rcu:RCOM_0731640
description heat-shock protein, putative
nr
ID XP_002520459.1
description heat-shock protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S390
description Heat-shock protein, putative OS=Ricinus communis GN=RCOM_0731640 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15374: 1632-2344 , PASA_asmbl_15375: 1975-2192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166718_010 0.0 - - heat-shock protein, putative [Ricinus communis]
2 Hb_004032_280 0.0620111833 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
3 Hb_000803_080 0.0692023704 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
4 Hb_008536_020 0.0717159264 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
5 Hb_002600_170 0.0759179408 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006831_090 0.0771404144 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
7 Hb_000329_780 0.0816232236 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
8 Hb_004607_110 0.0833534688 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
9 Hb_185811_010 0.0841208211 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
10 Hb_000318_310 0.0860645337 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
11 Hb_003913_120 0.0864801179 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
12 Hb_001735_040 0.0867571482 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
13 Hb_001981_050 0.0882244662 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
14 Hb_003163_010 0.0886368567 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
15 Hb_004807_010 0.0889146261 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
16 Hb_147028_010 0.0891867396 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
17 Hb_000599_150 0.0893115439 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
18 Hb_000915_170 0.0917576173 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
19 Hb_028491_010 0.0921262752 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
20 Hb_001158_130 0.0938871381 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_166718_010 Hb_166718_010 Hb_004032_280 Hb_004032_280 Hb_166718_010--Hb_004032_280 Hb_000803_080 Hb_000803_080 Hb_166718_010--Hb_000803_080 Hb_008536_020 Hb_008536_020 Hb_166718_010--Hb_008536_020 Hb_002600_170 Hb_002600_170 Hb_166718_010--Hb_002600_170 Hb_006831_090 Hb_006831_090 Hb_166718_010--Hb_006831_090 Hb_000329_780 Hb_000329_780 Hb_166718_010--Hb_000329_780 Hb_004032_280--Hb_006831_090 Hb_000599_150 Hb_000599_150 Hb_004032_280--Hb_000599_150 Hb_004032_280--Hb_002600_170 Hb_004032_280--Hb_000329_780 Hb_004032_280--Hb_008536_020 Hb_003913_120 Hb_003913_120 Hb_000803_080--Hb_003913_120 Hb_004807_010 Hb_004807_010 Hb_000803_080--Hb_004807_010 Hb_028491_010 Hb_028491_010 Hb_000803_080--Hb_028491_010 Hb_004607_110 Hb_004607_110 Hb_000803_080--Hb_004607_110 Hb_147028_010 Hb_147028_010 Hb_000803_080--Hb_147028_010 Hb_012098_120 Hb_012098_120 Hb_000803_080--Hb_012098_120 Hb_008536_020--Hb_002600_170 Hb_008536_020--Hb_006831_090 Hb_008536_020--Hb_000329_780 Hb_000520_040 Hb_000520_040 Hb_008536_020--Hb_000520_040 Hb_002374_180 Hb_002374_180 Hb_008536_020--Hb_002374_180 Hb_002600_170--Hb_002374_180 Hb_002600_170--Hb_006831_090 Hb_002600_170--Hb_000329_780 Hb_005532_030 Hb_005532_030 Hb_002600_170--Hb_005532_030 Hb_006831_090--Hb_000329_780 Hb_006831_090--Hb_002374_180 Hb_172426_070 Hb_172426_070 Hb_006831_090--Hb_172426_070 Hb_002119_100 Hb_002119_100 Hb_000329_780--Hb_002119_100 Hb_000329_780--Hb_002374_180 Hb_000031_180 Hb_000031_180 Hb_000329_780--Hb_000031_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.247957 5.23597 6.37549 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0888115 0 0.109793 8.65438

CAGE analysis