Hb_166786_030

Information

Type -
Description -
Location Contig166786: 10109-13571
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012453396.1
description PREDICTED: uncharacterized protein LOC105775425 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0P5S7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_28234 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166786_030 0.0 - - PREDICTED: uncharacterized protein LOC105775425 [Gossypium raimondii]
2 Hb_001230_010 0.1828041226 - - -
3 Hb_001178_020 0.1962674313 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
4 Hb_002007_290 0.2026868051 - - -
5 Hb_004254_040 0.2107571596 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
6 Hb_024828_040 0.2138651541 - - -
7 Hb_001635_220 0.2178513302 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
8 Hb_170116_010 0.219037699 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
9 Hb_001980_020 0.2219749528 - - -
10 Hb_003859_010 0.2241511236 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
11 Hb_001565_100 0.2271156038 - - unnamed protein product [Coffea canephora]
12 Hb_000038_130 0.2309370985 - - -
13 Hb_005217_020 0.2316609543 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
14 Hb_000352_150 0.2344148331 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
15 Hb_004534_020 0.2347748854 - - PREDICTED: cysteine proteinase inhibitor B [Jatropha curcas]
16 Hb_002078_430 0.2349028604 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
17 Hb_007382_040 0.2356493267 - - uncharacterized LOC105644857 [Jatropha curcas]
18 Hb_027998_030 0.2388683723 - - laccase, putative [Ricinus communis]
19 Hb_000270_400 0.2425855996 - - lipase, putative [Ricinus communis]
20 Hb_003777_070 0.2443387925 - - -

Gene co-expression network

sample Hb_166786_030 Hb_166786_030 Hb_001230_010 Hb_001230_010 Hb_166786_030--Hb_001230_010 Hb_001178_020 Hb_001178_020 Hb_166786_030--Hb_001178_020 Hb_002007_290 Hb_002007_290 Hb_166786_030--Hb_002007_290 Hb_004254_040 Hb_004254_040 Hb_166786_030--Hb_004254_040 Hb_024828_040 Hb_024828_040 Hb_166786_030--Hb_024828_040 Hb_001635_220 Hb_001635_220 Hb_166786_030--Hb_001635_220 Hb_001230_010--Hb_002007_290 Hb_002094_020 Hb_002094_020 Hb_001230_010--Hb_002094_020 Hb_000928_230 Hb_000928_230 Hb_001230_010--Hb_000928_230 Hb_031862_050 Hb_031862_050 Hb_001230_010--Hb_031862_050 Hb_017111_010 Hb_017111_010 Hb_001230_010--Hb_017111_010 Hb_002627_060 Hb_002627_060 Hb_001178_020--Hb_002627_060 Hb_001178_020--Hb_001635_220 Hb_170116_010 Hb_170116_010 Hb_001178_020--Hb_170116_010 Hb_000172_610 Hb_000172_610 Hb_001178_020--Hb_000172_610 Hb_001178_020--Hb_004254_040 Hb_005217_020 Hb_005217_020 Hb_001178_020--Hb_005217_020 Hb_002007_290--Hb_002094_020 Hb_002007_290--Hb_000928_230 Hb_002007_290--Hb_017111_010 Hb_002007_290--Hb_031862_050 Hb_000270_400 Hb_000270_400 Hb_004254_040--Hb_000270_400 Hb_004254_040--Hb_001635_220 Hb_004254_040--Hb_000172_610 Hb_001140_080 Hb_001140_080 Hb_004254_040--Hb_001140_080 Hb_012807_120 Hb_012807_120 Hb_004254_040--Hb_012807_120 Hb_000009_640 Hb_000009_640 Hb_004254_040--Hb_000009_640 Hb_003859_010 Hb_003859_010 Hb_024828_040--Hb_003859_010 Hb_075812_010 Hb_075812_010 Hb_024828_040--Hb_075812_010 Hb_001565_100 Hb_001565_100 Hb_024828_040--Hb_001565_100 Hb_004534_020 Hb_004534_020 Hb_024828_040--Hb_004534_020 Hb_000816_110 Hb_000816_110 Hb_024828_040--Hb_000816_110 Hb_003913_100 Hb_003913_100 Hb_001635_220--Hb_003913_100 Hb_000483_370 Hb_000483_370 Hb_001635_220--Hb_000483_370 Hb_000172_530 Hb_000172_530 Hb_001635_220--Hb_000172_530 Hb_000603_200 Hb_000603_200 Hb_001635_220--Hb_000603_200 Hb_000038_130 Hb_000038_130 Hb_001635_220--Hb_000038_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.338264 0.0226282 0 0 0.135737 0.182975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.062128 0.0977101 0 0.0197337 0

CAGE analysis