Hb_166828_010

Information

Type -
Description -
Location Contig166828: 172-1309
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166828_010 0.0 - - -
2 Hb_002092_140 0.0164318488 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
3 Hb_000320_170 0.0752994021 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002836_030 0.090834852 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
5 Hb_003582_050 0.0946099246 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
6 Hb_080873_010 0.1056467037 - - -
7 Hb_144813_010 0.1077584114 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
8 Hb_000002_280 0.11852582 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
9 Hb_000300_240 0.1292855611 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
10 Hb_011888_010 0.1402555232 - - Receptor like protein 46, putative [Theobroma cacao]
11 Hb_071998_010 0.1441979951 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
12 Hb_000892_040 0.1613104918 - - -
13 Hb_034909_010 0.1721340269 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_003410_020 0.1722495953 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_010091_040 0.1822935146 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
16 Hb_004566_050 0.1931370003 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_111985_030 0.1935471136 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
18 Hb_002284_040 0.197062784 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
19 Hb_011344_150 0.205997846 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_000640_280 0.2085480115 - - Stachyose synthase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_166828_010 Hb_166828_010 Hb_002092_140 Hb_002092_140 Hb_166828_010--Hb_002092_140 Hb_000320_170 Hb_000320_170 Hb_166828_010--Hb_000320_170 Hb_002836_030 Hb_002836_030 Hb_166828_010--Hb_002836_030 Hb_003582_050 Hb_003582_050 Hb_166828_010--Hb_003582_050 Hb_080873_010 Hb_080873_010 Hb_166828_010--Hb_080873_010 Hb_144813_010 Hb_144813_010 Hb_166828_010--Hb_144813_010 Hb_002092_140--Hb_080873_010 Hb_002092_140--Hb_000320_170 Hb_002092_140--Hb_002836_030 Hb_002092_140--Hb_003582_050 Hb_000002_280 Hb_000002_280 Hb_002092_140--Hb_000002_280 Hb_000320_170--Hb_002836_030 Hb_000320_170--Hb_003582_050 Hb_000320_170--Hb_144813_010 Hb_011888_010 Hb_011888_010 Hb_000320_170--Hb_011888_010 Hb_071998_010 Hb_071998_010 Hb_000320_170--Hb_071998_010 Hb_002836_030--Hb_003582_050 Hb_002836_030--Hb_144813_010 Hb_002836_030--Hb_011888_010 Hb_002836_030--Hb_071998_010 Hb_034909_010 Hb_034909_010 Hb_002836_030--Hb_034909_010 Hb_003582_050--Hb_144813_010 Hb_003582_050--Hb_011888_010 Hb_003582_050--Hb_071998_010 Hb_003582_050--Hb_034909_010 Hb_000892_040 Hb_000892_040 Hb_080873_010--Hb_000892_040 Hb_080873_010--Hb_000002_280 Hb_002284_040 Hb_002284_040 Hb_080873_010--Hb_002284_040 Hb_000501_180 Hb_000501_180 Hb_080873_010--Hb_000501_180 Hb_144813_010--Hb_011888_010 Hb_144813_010--Hb_071998_010 Hb_144813_010--Hb_034909_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.23218 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.1181

CAGE analysis