Hb_167186_010

Information

Type -
Description -
Location Contig167186: 62-958
Sequence    

Annotation

kegg
ID rcu:RCOM_0579970
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID XP_002525269.1
description cation-transporting atpase plant, putative [Ricinus communis]
swissprot
ID Q37145
description Calcium-transporting ATPase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=3
trembl
ID B9SH00
description Calcium-transporting ATPase OS=Ricinus communis GN=RCOM_0579970 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167186_010 0.0 - - cation-transporting atpase plant, putative [Ricinus communis]
2 Hb_005054_330 0.0612137703 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
3 Hb_007858_020 0.0754504735 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
4 Hb_008725_220 0.0762086493 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
5 Hb_000959_240 0.0795528107 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
6 Hb_000025_490 0.0921860794 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
7 Hb_002119_030 0.0933447373 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
8 Hb_000032_150 0.1035089303 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
9 Hb_003207_230 0.1040971545 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
10 Hb_004032_220 0.1073744939 - - Calmodulin, putative [Ricinus communis]
11 Hb_047955_010 0.1083955051 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
12 Hb_002542_030 0.1131786425 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
13 Hb_000164_160 0.1135085318 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
14 Hb_124953_010 0.1166715033 - - hypothetical protein RCOM_1314600 [Ricinus communis]
15 Hb_001619_140 0.1230681027 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
16 Hb_001515_040 0.1237394528 - - -
17 Hb_067028_010 0.1267840961 - - BnaC03g72040D [Brassica napus]
18 Hb_101437_010 0.1300139598 - - PREDICTED: protein P21-like [Jatropha curcas]
19 Hb_006395_020 0.1300981951 - - hypothetical protein RCOM_0725510 [Ricinus communis]
20 Hb_000627_130 0.1317786864 - - Polcalcin Jun o, putative [Ricinus communis]

Gene co-expression network

sample Hb_167186_010 Hb_167186_010 Hb_005054_330 Hb_005054_330 Hb_167186_010--Hb_005054_330 Hb_007858_020 Hb_007858_020 Hb_167186_010--Hb_007858_020 Hb_008725_220 Hb_008725_220 Hb_167186_010--Hb_008725_220 Hb_000959_240 Hb_000959_240 Hb_167186_010--Hb_000959_240 Hb_000025_490 Hb_000025_490 Hb_167186_010--Hb_000025_490 Hb_002119_030 Hb_002119_030 Hb_167186_010--Hb_002119_030 Hb_005054_330--Hb_007858_020 Hb_005054_330--Hb_000959_240 Hb_005054_330--Hb_008725_220 Hb_000164_160 Hb_000164_160 Hb_005054_330--Hb_000164_160 Hb_003207_230 Hb_003207_230 Hb_005054_330--Hb_003207_230 Hb_004032_220 Hb_004032_220 Hb_007858_020--Hb_004032_220 Hb_124953_010 Hb_124953_010 Hb_007858_020--Hb_124953_010 Hb_007858_020--Hb_000959_240 Hb_000032_150 Hb_000032_150 Hb_007858_020--Hb_000032_150 Hb_008725_220--Hb_000959_240 Hb_008725_220--Hb_000025_490 Hb_101437_010 Hb_101437_010 Hb_008725_220--Hb_101437_010 Hb_001515_040 Hb_001515_040 Hb_008725_220--Hb_001515_040 Hb_000959_240--Hb_101437_010 Hb_000959_240--Hb_000025_490 Hb_000025_490--Hb_002119_030 Hb_000025_490--Hb_001515_040 Hb_000025_490--Hb_101437_010 Hb_067028_010 Hb_067028_010 Hb_002119_030--Hb_067028_010 Hb_002119_030--Hb_008725_220 Hb_002119_030--Hb_000959_240 Hb_002119_030--Hb_005054_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0768978 52.3295 31.7176 7.69114 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.285552 0.231855 0.849067 0.509869

CAGE analysis