Hb_167272_010

Information

Type -
Description -
Location Contig167272: 42-932
Sequence    

Annotation

kegg
ID vvi:100262220
description probable leucine-rich repeat receptor-like protein kinase At1g35710
nr
ID XP_010656627.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID F6HYL7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g00690 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167272_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
2 Hb_001515_030 0.0626205885 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_007420_010 0.0686576395 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
4 Hb_031862_020 0.0701833893 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
5 Hb_000237_070 0.0816028277 - - Purple acid phosphatase precursor, putative [Ricinus communis]
6 Hb_009803_030 0.0851997021 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
7 Hb_000085_220 0.0859574199 - - conserved hypothetical protein [Ricinus communis]
8 Hb_014361_020 0.0913349612 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
9 Hb_000501_040 0.0917289753 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_114310_050 0.0942774627 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
11 Hb_006269_010 0.0963361458 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
12 Hb_005569_030 0.1016724392 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
13 Hb_046101_010 0.1046103895 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
14 Hb_007420_020 0.105994041 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_001369_070 0.1090480005 - - unnamed protein product [Vitis vinifera]
16 Hb_004166_020 0.1105623835 - - -
17 Hb_001538_050 0.1145272362 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
18 Hb_007894_030 0.1151069502 - - calcium-dependent protein kinase, putative [Ricinus communis]
19 Hb_000382_030 0.1167800143 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
20 Hb_012098_180 0.120386382 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]

Gene co-expression network

sample Hb_167272_010 Hb_167272_010 Hb_001515_030 Hb_001515_030 Hb_167272_010--Hb_001515_030 Hb_007420_010 Hb_007420_010 Hb_167272_010--Hb_007420_010 Hb_031862_020 Hb_031862_020 Hb_167272_010--Hb_031862_020 Hb_000237_070 Hb_000237_070 Hb_167272_010--Hb_000237_070 Hb_009803_030 Hb_009803_030 Hb_167272_010--Hb_009803_030 Hb_000085_220 Hb_000085_220 Hb_167272_010--Hb_000085_220 Hb_001515_030--Hb_009803_030 Hb_001515_030--Hb_007420_010 Hb_005569_030 Hb_005569_030 Hb_001515_030--Hb_005569_030 Hb_114310_050 Hb_114310_050 Hb_001515_030--Hb_114310_050 Hb_008040_060 Hb_008040_060 Hb_001515_030--Hb_008040_060 Hb_000501_040 Hb_000501_040 Hb_007420_010--Hb_000501_040 Hb_007420_010--Hb_114310_050 Hb_007420_020 Hb_007420_020 Hb_007420_010--Hb_007420_020 Hb_007420_010--Hb_009803_030 Hb_031862_020--Hb_000237_070 Hb_031862_020--Hb_000501_040 Hb_031862_020--Hb_000085_220 Hb_000382_030 Hb_000382_030 Hb_031862_020--Hb_000382_030 Hb_031862_020--Hb_007420_010 Hb_000237_070--Hb_000382_030 Hb_005867_030 Hb_005867_030 Hb_000237_070--Hb_005867_030 Hb_000318_050 Hb_000318_050 Hb_000237_070--Hb_000318_050 Hb_001377_130 Hb_001377_130 Hb_000237_070--Hb_001377_130 Hb_000819_010 Hb_000819_010 Hb_009803_030--Hb_000819_010 Hb_000280_110 Hb_000280_110 Hb_009803_030--Hb_000280_110 Hb_046101_010 Hb_046101_010 Hb_009803_030--Hb_046101_010 Hb_004166_020 Hb_004166_020 Hb_000085_220--Hb_004166_020 Hb_014361_020 Hb_014361_020 Hb_000085_220--Hb_014361_020 Hb_000092_030 Hb_000092_030 Hb_000085_220--Hb_000092_030 Hb_006269_010 Hb_006269_010 Hb_000085_220--Hb_006269_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.544826 0.233902 0.198342 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.261439 0.200739

CAGE analysis