Hb_167452_010

Information

Type -
Description -
Location Contig167452: 875-1480
Sequence    

Annotation

kegg
ID brp:103848430
description DNA-binding protein HEXBP-like
nr
ID KDP39400.1
description hypothetical protein JCGZ_03682 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4H3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03682 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167452_010 0.0 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
2 Hb_000853_040 0.09265939 - - conserved hypothetical protein [Ricinus communis]
3 Hb_021346_040 0.1985679886 - - hypothetical protein JCGZ_26751 [Jatropha curcas]
4 Hb_010661_040 0.2920364302 - - hypothetical protein POPTR_0021s00470g [Populus trichocarpa]
5 Hb_000392_460 0.2938413275 - - Pectate lyase precursor, putative [Ricinus communis]
6 Hb_000260_150 0.3028640308 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
7 Hb_016859_010 0.3105006835 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_009449_010 0.3138904866 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
9 Hb_083822_010 0.3187828902 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_003938_030 0.3188688721 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
11 Hb_001638_010 0.3191741935 - - -
12 Hb_187136_010 0.319855598 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
13 Hb_116293_020 0.3247126796 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
14 Hb_005520_020 0.3250459053 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
15 Hb_002401_010 0.3314608542 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
16 Hb_001104_050 0.3322818258 - - -
17 Hb_000375_230 0.3342348974 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
18 Hb_098988_010 0.3353283678 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
19 Hb_105226_010 0.336340475 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
20 Hb_049415_010 0.3366113517 - - -

Gene co-expression network

sample Hb_167452_010 Hb_167452_010 Hb_000853_040 Hb_000853_040 Hb_167452_010--Hb_000853_040 Hb_021346_040 Hb_021346_040 Hb_167452_010--Hb_021346_040 Hb_010661_040 Hb_010661_040 Hb_167452_010--Hb_010661_040 Hb_000392_460 Hb_000392_460 Hb_167452_010--Hb_000392_460 Hb_000260_150 Hb_000260_150 Hb_167452_010--Hb_000260_150 Hb_016859_010 Hb_016859_010 Hb_167452_010--Hb_016859_010 Hb_000853_040--Hb_021346_040 Hb_000853_040--Hb_000392_460 Hb_083822_010 Hb_083822_010 Hb_000853_040--Hb_083822_010 Hb_003938_030 Hb_003938_030 Hb_000853_040--Hb_003938_030 Hb_001104_050 Hb_001104_050 Hb_000853_040--Hb_001104_050 Hb_021346_040--Hb_000392_460 Hb_021346_040--Hb_083822_010 Hb_021346_040--Hb_003938_030 Hb_025669_030 Hb_025669_030 Hb_021346_040--Hb_025669_030 Hb_010661_040--Hb_000853_040 Hb_004088_060 Hb_004088_060 Hb_010661_040--Hb_004088_060 Hb_005524_010 Hb_005524_010 Hb_010661_040--Hb_005524_010 Hb_000608_210 Hb_000608_210 Hb_010661_040--Hb_000608_210 Hb_003405_040 Hb_003405_040 Hb_010661_040--Hb_003405_040 Hb_000392_460--Hb_083822_010 Hb_001623_310 Hb_001623_310 Hb_000392_460--Hb_001623_310 Hb_000392_460--Hb_025669_030 Hb_000392_460--Hb_003938_030 Hb_006925_090 Hb_006925_090 Hb_000260_150--Hb_006925_090 Hb_001638_010 Hb_001638_010 Hb_000260_150--Hb_001638_010 Hb_011505_010 Hb_011505_010 Hb_000260_150--Hb_011505_010 Hb_002257_020 Hb_002257_020 Hb_000260_150--Hb_002257_020 Hb_114435_010 Hb_114435_010 Hb_000260_150--Hb_114435_010 Hb_187136_010 Hb_187136_010 Hb_016859_010--Hb_187136_010 Hb_009449_010 Hb_009449_010 Hb_016859_010--Hb_009449_010 Hb_098988_010 Hb_098988_010 Hb_016859_010--Hb_098988_010 Hb_116293_020 Hb_116293_020 Hb_016859_010--Hb_116293_020 Hb_005520_020 Hb_005520_020 Hb_016859_010--Hb_005520_020 Hb_049415_010 Hb_049415_010 Hb_016859_010--Hb_049415_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0726778 0.0326202 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0781962 0 0 0

CAGE analysis