Hb_167467_010

Information

Type -
Description -
Location Contig167467: 135-503
Sequence    

Annotation

kegg
ID cic:CICLE_v10029508mg
description hypothetical protein
nr
ID XP_006422982.1
description hypothetical protein CICLE_v10029508mg [Citrus clementina]
swissprot
ID P16149
description 40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1
trembl
ID A0A067CYW4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032049mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167467_010 0.0 - - hypothetical protein CICLE_v10029508mg [Citrus clementina]
2 Hb_002234_210 0.1293025053 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
3 Hb_000144_110 0.1356029799 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
4 Hb_001616_020 0.1362991191 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
5 Hb_003638_080 0.1389812083 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
6 Hb_004958_050 0.1402821602 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
7 Hb_000057_070 0.1432208521 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
8 Hb_002293_030 0.1445248508 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
9 Hb_000526_150 0.1500075984 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
10 Hb_009252_130 0.1519482749 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
11 Hb_012753_230 0.1520054143 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
12 Hb_004724_160 0.1537114247 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
13 Hb_000634_050 0.1539873373 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
14 Hb_011310_060 0.1543811785 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
15 Hb_000190_060 0.155488323 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
16 Hb_000699_040 0.1558812491 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
17 Hb_011689_050 0.1558832791 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
18 Hb_011609_180 0.1559275909 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
19 Hb_001538_120 0.1560189596 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
20 Hb_001053_160 0.1575093304 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]

Gene co-expression network

sample Hb_167467_010 Hb_167467_010 Hb_002234_210 Hb_002234_210 Hb_167467_010--Hb_002234_210 Hb_000144_110 Hb_000144_110 Hb_167467_010--Hb_000144_110 Hb_001616_020 Hb_001616_020 Hb_167467_010--Hb_001616_020 Hb_003638_080 Hb_003638_080 Hb_167467_010--Hb_003638_080 Hb_004958_050 Hb_004958_050 Hb_167467_010--Hb_004958_050 Hb_000057_070 Hb_000057_070 Hb_167467_010--Hb_000057_070 Hb_002234_210--Hb_004958_050 Hb_000634_050 Hb_000634_050 Hb_002234_210--Hb_000634_050 Hb_003058_070 Hb_003058_070 Hb_002234_210--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_002234_210--Hb_000417_110 Hb_000190_060 Hb_000190_060 Hb_002234_210--Hb_000190_060 Hb_009252_130 Hb_009252_130 Hb_002234_210--Hb_009252_130 Hb_000815_270 Hb_000815_270 Hb_000144_110--Hb_000815_270 Hb_011609_180 Hb_011609_180 Hb_000144_110--Hb_011609_180 Hb_001045_080 Hb_001045_080 Hb_000144_110--Hb_001045_080 Hb_009851_100 Hb_009851_100 Hb_000144_110--Hb_009851_100 Hb_000025_600 Hb_000025_600 Hb_000144_110--Hb_000025_600 Hb_000144_110--Hb_009252_130 Hb_001616_020--Hb_009252_130 Hb_011689_050 Hb_011689_050 Hb_001616_020--Hb_011689_050 Hb_001616_020--Hb_004958_050 Hb_001616_020--Hb_002234_210 Hb_001616_020--Hb_000144_110 Hb_151930_020 Hb_151930_020 Hb_001616_020--Hb_151930_020 Hb_000699_040 Hb_000699_040 Hb_003638_080--Hb_000699_040 Hb_000134_020 Hb_000134_020 Hb_003638_080--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_003638_080--Hb_000236_460 Hb_000617_050 Hb_000617_050 Hb_003638_080--Hb_000617_050 Hb_001053_160 Hb_001053_160 Hb_003638_080--Hb_001053_160 Hb_001214_140 Hb_001214_140 Hb_003638_080--Hb_001214_140 Hb_004958_050--Hb_011689_050 Hb_004958_050--Hb_000634_050 Hb_000526_150 Hb_000526_150 Hb_004958_050--Hb_000526_150 Hb_004958_050--Hb_003638_080 Hb_001538_120 Hb_001538_120 Hb_000057_070--Hb_001538_120 Hb_000545_150 Hb_000545_150 Hb_000057_070--Hb_000545_150 Hb_012573_070 Hb_012573_070 Hb_000057_070--Hb_012573_070 Hb_004052_020 Hb_004052_020 Hb_000057_070--Hb_004052_020 Hb_000057_070--Hb_000526_150 Hb_012753_230 Hb_012753_230 Hb_000057_070--Hb_012753_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.00662 0.492685 2.90831 0.754988 4.85861 5.87397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.82362 17.641 3.72099 2.72696 0

CAGE analysis