Hb_167498_010

Information

Type -
Description -
Location Contig167498: 4417-10292
Sequence    

Annotation

kegg
ID rcu:RCOM_0301990
description hypothetical protein
nr
ID XP_012074141.1
description PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
swissprot
ID Q8GXA4
description WPP domain-interacting protein 1 OS=Arabidopsis thaliana GN=WIP1 PE=1 SV=1
trembl
ID A0A067KJN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09527 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15502: 5841-10270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167498_010 0.0 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
2 Hb_001369_730 0.0435247138 - - F5O11.10, putative isoform 1 [Theobroma cacao]
3 Hb_003158_010 0.0455760119 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
4 Hb_001409_020 0.0473443763 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
5 Hb_000329_470 0.0516226167 - - ccr4-not transcription complex, putative [Ricinus communis]
6 Hb_000225_040 0.0525613532 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
7 Hb_007254_070 0.056418363 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
8 Hb_010618_010 0.0575681288 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
9 Hb_001638_270 0.0587359413 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
10 Hb_004800_080 0.0611871391 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
11 Hb_002518_280 0.0613892196 - - phosphate transporter [Manihot esculenta]
12 Hb_000395_130 0.0624378214 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
13 Hb_007163_120 0.0641230155 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
14 Hb_000329_710 0.0648250749 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
15 Hb_007416_180 0.0648426283 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
16 Hb_000038_170 0.0663013901 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
17 Hb_002025_020 0.0666732064 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
18 Hb_001248_060 0.0682440778 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003370_030 0.0685389825 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
20 Hb_000538_270 0.0685671609 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]

Gene co-expression network

sample Hb_167498_010 Hb_167498_010 Hb_001369_730 Hb_001369_730 Hb_167498_010--Hb_001369_730 Hb_003158_010 Hb_003158_010 Hb_167498_010--Hb_003158_010 Hb_001409_020 Hb_001409_020 Hb_167498_010--Hb_001409_020 Hb_000329_470 Hb_000329_470 Hb_167498_010--Hb_000329_470 Hb_000225_040 Hb_000225_040 Hb_167498_010--Hb_000225_040 Hb_007254_070 Hb_007254_070 Hb_167498_010--Hb_007254_070 Hb_001369_730--Hb_000329_470 Hb_001369_730--Hb_001409_020 Hb_001198_100 Hb_001198_100 Hb_001369_730--Hb_001198_100 Hb_000732_010 Hb_000732_010 Hb_001369_730--Hb_000732_010 Hb_004800_080 Hb_004800_080 Hb_001369_730--Hb_004800_080 Hb_003158_010--Hb_000329_470 Hb_003158_010--Hb_000225_040 Hb_002025_020 Hb_002025_020 Hb_003158_010--Hb_002025_020 Hb_000011_200 Hb_000011_200 Hb_003158_010--Hb_000011_200 Hb_000347_070 Hb_000347_070 Hb_003158_010--Hb_000347_070 Hb_010618_010 Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_003226_180 Hb_003226_180 Hb_000329_470--Hb_003226_180 Hb_000329_470--Hb_000225_040 Hb_001579_220 Hb_001579_220 Hb_000329_470--Hb_001579_220 Hb_000225_040--Hb_000011_200 Hb_000225_040--Hb_010618_010 Hb_000193_190 Hb_000193_190 Hb_000225_040--Hb_000193_190 Hb_004355_020 Hb_004355_020 Hb_007254_070--Hb_004355_020 Hb_120327_010 Hb_120327_010 Hb_007254_070--Hb_120327_010 Hb_002903_060 Hb_002903_060 Hb_007254_070--Hb_002903_060 Hb_000395_130 Hb_000395_130 Hb_007254_070--Hb_000395_130 Hb_007254_070--Hb_003158_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8155 21.4133 11.5948 13.5191 20.8145 20.672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5337 20.3409 19.5956 18.7058 16.4164

CAGE analysis