Hb_167775_010

Information

Type -
Description -
Location Contig167775: 566-2500
Sequence    

Annotation

kegg
ID rcu:RCOM_1487620
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012069263.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067L9R0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24838 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cc-nbs-lrr resistance isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15584: 1672-2539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167775_010 0.0 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_029748_020 0.1171882284 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000589_420 0.1322473316 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
4 Hb_003912_080 0.1390584091 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
5 Hb_001195_250 0.1483535961 - - lrr receptor protein kinase, putative [Ricinus communis]
6 Hb_000321_120 0.1505744499 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
7 Hb_002909_100 0.1533986035 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
8 Hb_009745_010 0.1543668457 - - cellulose synthase-like protein [Populus tomentosa]
9 Hb_000042_060 0.1571282096 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
10 Hb_001522_040 0.1592004483 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_006422_020 0.1592213897 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
12 Hb_000251_050 0.1628972687 - - hypothetical protein JCGZ_21678 [Jatropha curcas]
13 Hb_001269_520 0.163665366 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
14 Hb_003687_010 0.1644845907 - - Cysteine-rich RLK 29, putative [Theobroma cacao]
15 Hb_002099_060 0.1653048682 - - Protein AFR, putative [Ricinus communis]
16 Hb_000103_410 0.1660233816 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
17 Hb_052117_010 0.1679085617 - - kinase, putative [Ricinus communis]
18 Hb_005724_040 0.1681994118 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
19 Hb_001408_020 0.1686036971 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
20 Hb_006717_010 0.1692176832 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]

Gene co-expression network

sample Hb_167775_010 Hb_167775_010 Hb_029748_020 Hb_029748_020 Hb_167775_010--Hb_029748_020 Hb_000589_420 Hb_000589_420 Hb_167775_010--Hb_000589_420 Hb_003912_080 Hb_003912_080 Hb_167775_010--Hb_003912_080 Hb_001195_250 Hb_001195_250 Hb_167775_010--Hb_001195_250 Hb_000321_120 Hb_000321_120 Hb_167775_010--Hb_000321_120 Hb_002909_100 Hb_002909_100 Hb_167775_010--Hb_002909_100 Hb_000100_210 Hb_000100_210 Hb_029748_020--Hb_000100_210 Hb_029748_020--Hb_000321_120 Hb_001522_040 Hb_001522_040 Hb_029748_020--Hb_001522_040 Hb_002099_060 Hb_002099_060 Hb_029748_020--Hb_002099_060 Hb_000438_020 Hb_000438_020 Hb_029748_020--Hb_000438_020 Hb_155150_010 Hb_155150_010 Hb_029748_020--Hb_155150_010 Hb_000556_070 Hb_000556_070 Hb_000589_420--Hb_000556_070 Hb_000567_240 Hb_000567_240 Hb_000589_420--Hb_000567_240 Hb_006717_010 Hb_006717_010 Hb_000589_420--Hb_006717_010 Hb_000589_420--Hb_000321_120 Hb_000589_420--Hb_003912_080 Hb_003912_080--Hb_002909_100 Hb_000230_470 Hb_000230_470 Hb_003912_080--Hb_000230_470 Hb_001999_320 Hb_001999_320 Hb_003912_080--Hb_001999_320 Hb_004678_010 Hb_004678_010 Hb_003912_080--Hb_004678_010 Hb_001948_090 Hb_001948_090 Hb_003912_080--Hb_001948_090 Hb_002026_030 Hb_002026_030 Hb_003912_080--Hb_002026_030 Hb_000103_410 Hb_000103_410 Hb_001195_250--Hb_000103_410 Hb_000753_150 Hb_000753_150 Hb_001195_250--Hb_000753_150 Hb_003177_090 Hb_003177_090 Hb_001195_250--Hb_003177_090 Hb_001269_520 Hb_001269_520 Hb_001195_250--Hb_001269_520 Hb_001195_250--Hb_006717_010 Hb_000251_050 Hb_000251_050 Hb_001195_250--Hb_000251_050 Hb_000340_360 Hb_000340_360 Hb_000321_120--Hb_000340_360 Hb_000221_180 Hb_000221_180 Hb_000321_120--Hb_000221_180 Hb_000175_270 Hb_000175_270 Hb_000321_120--Hb_000175_270 Hb_013399_090 Hb_013399_090 Hb_000321_120--Hb_013399_090 Hb_001269_050 Hb_001269_050 Hb_000321_120--Hb_001269_050 Hb_002909_100--Hb_000230_470 Hb_000196_010 Hb_000196_010 Hb_002909_100--Hb_000196_010 Hb_009745_010 Hb_009745_010 Hb_002909_100--Hb_009745_010 Hb_005408_100 Hb_005408_100 Hb_002909_100--Hb_005408_100 Hb_000753_120 Hb_000753_120 Hb_002909_100--Hb_000753_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06963 3.80997 2.64383 3.58432 0.582375 1.09906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.207145 1.48681 4.37564

CAGE analysis