Hb_168000_010

Information

Type -
Description -
Location Contig168000: 220-823
Sequence    

Annotation

kegg
ID tcc:TCM_042750
description Calcium-dependent lipid-binding family protein isoform 1
nr
ID XP_007009307.1
description Calcium-dependent lipid-binding family protein isoform 2 [Theobroma cacao]
swissprot
ID Q0JHU5
description Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica GN=ERG1 PE=2 SV=1
trembl
ID A0A061FN73
description Calcium-dependent lipid-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_042750 PE=4 SV=1
Gene Ontology
ID GO:0005622
description elicitor-responsive protein 1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168000_010 0.0 - - Calcium-dependent lipid-binding family protein isoform 2 [Theobroma cacao]
2 Hb_000057_040 0.0620575859 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000395_170 0.0769620301 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
4 Hb_003175_010 0.0786190749 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
5 Hb_007590_010 0.0807410866 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_002609_110 0.0814173501 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
7 Hb_007317_210 0.0848292908 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
8 Hb_048937_040 0.0861915174 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
9 Hb_168707_030 0.0867679276 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
10 Hb_000229_040 0.0874964185 - - Secretory carrier membrane protein (SCAMP) family protein isoform 2 [Theobroma cacao]
11 Hb_000099_240 0.0881068605 - - 60S ribosomal protein L7a, putative [Ricinus communis]
12 Hb_004195_160 0.088530024 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
13 Hb_000321_070 0.088769128 - - protein with unknown function [Ricinus communis]
14 Hb_010457_030 0.089030283 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
15 Hb_002811_360 0.0892280042 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
16 Hb_003001_140 0.0895115456 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
17 Hb_004545_060 0.0909585695 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
18 Hb_001252_080 0.0919978204 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
19 Hb_002506_020 0.0932904558 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
20 Hb_021409_020 0.0936688011 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]

Gene co-expression network

sample Hb_168000_010 Hb_168000_010 Hb_000057_040 Hb_000057_040 Hb_168000_010--Hb_000057_040 Hb_000395_170 Hb_000395_170 Hb_168000_010--Hb_000395_170 Hb_003175_010 Hb_003175_010 Hb_168000_010--Hb_003175_010 Hb_007590_010 Hb_007590_010 Hb_168000_010--Hb_007590_010 Hb_002609_110 Hb_002609_110 Hb_168000_010--Hb_002609_110 Hb_007317_210 Hb_007317_210 Hb_168000_010--Hb_007317_210 Hb_000057_040--Hb_002609_110 Hb_168707_030 Hb_168707_030 Hb_000057_040--Hb_168707_030 Hb_003642_060 Hb_003642_060 Hb_000057_040--Hb_003642_060 Hb_004195_160 Hb_004195_160 Hb_000057_040--Hb_004195_160 Hb_001252_080 Hb_001252_080 Hb_000057_040--Hb_001252_080 Hb_000395_170--Hb_003175_010 Hb_000926_280 Hb_000926_280 Hb_000395_170--Hb_000926_280 Hb_148912_010 Hb_148912_010 Hb_000395_170--Hb_148912_010 Hb_048937_040 Hb_048937_040 Hb_000395_170--Hb_048937_040 Hb_000089_220 Hb_000089_220 Hb_000395_170--Hb_000089_220 Hb_004109_090 Hb_004109_090 Hb_000395_170--Hb_004109_090 Hb_000808_270 Hb_000808_270 Hb_003175_010--Hb_000808_270 Hb_003175_010--Hb_000926_280 Hb_019280_040 Hb_019280_040 Hb_003175_010--Hb_019280_040 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_003175_010--Hb_048937_040 Hb_000099_240 Hb_000099_240 Hb_007590_010--Hb_000099_240 Hb_001358_030 Hb_001358_030 Hb_007590_010--Hb_001358_030 Hb_005333_070 Hb_005333_070 Hb_007590_010--Hb_005333_070 Hb_001226_160 Hb_001226_160 Hb_007590_010--Hb_001226_160 Hb_000923_020 Hb_000923_020 Hb_007590_010--Hb_000923_020 Hb_002609_110--Hb_001252_080 Hb_002149_020 Hb_002149_020 Hb_002609_110--Hb_002149_020 Hb_002609_110--Hb_004195_160 Hb_182026_020 Hb_182026_020 Hb_002609_110--Hb_182026_020 Hb_000418_100 Hb_000418_100 Hb_002609_110--Hb_000418_100 Hb_011571_010 Hb_011571_010 Hb_007317_210--Hb_011571_010 Hb_002496_030 Hb_002496_030 Hb_007317_210--Hb_002496_030 Hb_007951_050 Hb_007951_050 Hb_007317_210--Hb_007951_050 Hb_007317_210--Hb_004109_090 Hb_007317_210--Hb_000395_170 Hb_000170_210 Hb_000170_210 Hb_007317_210--Hb_000170_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
189.526 81.1531 83.1571 119.719 222.783 308.019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
125.272 250.049 232.975 119.651 50.5714

CAGE analysis