Hb_168039_020

Information

Type -
Description -
Location Contig168039: 4620-7234
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15612: 6711-7033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168039_020 0.0 - - -
2 Hb_000510_350 0.0729712426 - - Putative polyprotein [Oryza sativa Japonica Group]
3 Hb_002290_100 0.0861612637 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
4 Hb_000890_190 0.0949226457 - - glutaredoxin, grx, putative [Ricinus communis]
5 Hb_051450_010 0.1186083545 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003683_090 0.1266450147 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_175087_010 0.1339754561 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
8 Hb_000473_010 0.1352184925 - - PREDICTED: galactolipase DONGLE, chloroplastic [Jatropha curcas]
9 Hb_025030_010 0.1381228525 - - -
10 Hb_002193_050 0.1485360201 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
11 Hb_000523_060 0.1522267073 - - -
12 Hb_000699_200 0.1532550366 - - hypothetical protein POPTR_0019s02340g [Populus trichocarpa]
13 Hb_000878_150 0.1568153188 - - Gibberellin receptor GID1, putative [Ricinus communis]
14 Hb_028841_020 0.1738132827 - - hypothetical protein CISIN_1g041345mg [Citrus sinensis]
15 Hb_005545_090 0.1866269561 - - -
16 Hb_124207_010 0.1880214051 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_012553_010 0.1907900523 - - hypothetical protein JCGZ_10552 [Jatropha curcas]
18 Hb_001021_110 0.1908207502 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
19 Hb_002787_100 0.1916732806 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
20 Hb_000389_250 0.1935092745 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21556 [Jatropha curcas]

Gene co-expression network

sample Hb_168039_020 Hb_168039_020 Hb_000510_350 Hb_000510_350 Hb_168039_020--Hb_000510_350 Hb_002290_100 Hb_002290_100 Hb_168039_020--Hb_002290_100 Hb_000890_190 Hb_000890_190 Hb_168039_020--Hb_000890_190 Hb_051450_010 Hb_051450_010 Hb_168039_020--Hb_051450_010 Hb_003683_090 Hb_003683_090 Hb_168039_020--Hb_003683_090 Hb_175087_010 Hb_175087_010 Hb_168039_020--Hb_175087_010 Hb_000510_350--Hb_000890_190 Hb_000510_350--Hb_003683_090 Hb_012553_010 Hb_012553_010 Hb_000510_350--Hb_012553_010 Hb_124207_010 Hb_124207_010 Hb_000510_350--Hb_124207_010 Hb_025030_010 Hb_025030_010 Hb_000510_350--Hb_025030_010 Hb_000473_010 Hb_000473_010 Hb_002290_100--Hb_000473_010 Hb_168436_010 Hb_168436_010 Hb_002290_100--Hb_168436_010 Hb_021409_060 Hb_021409_060 Hb_002290_100--Hb_021409_060 Hb_002127_010 Hb_002127_010 Hb_002290_100--Hb_002127_010 Hb_001268_360 Hb_001268_360 Hb_002290_100--Hb_001268_360 Hb_000890_190--Hb_003683_090 Hb_000699_200 Hb_000699_200 Hb_000890_190--Hb_000699_200 Hb_000890_190--Hb_000473_010 Hb_002193_050 Hb_002193_050 Hb_000890_190--Hb_002193_050 Hb_051450_010--Hb_025030_010 Hb_051450_010--Hb_000510_350 Hb_000389_250 Hb_000389_250 Hb_051450_010--Hb_000389_250 Hb_051450_010--Hb_000890_190 Hb_051450_010--Hb_002193_050 Hb_003683_090--Hb_000699_200 Hb_003683_090--Hb_000473_010 Hb_006124_040 Hb_006124_040 Hb_003683_090--Hb_006124_040 Hb_003683_090--Hb_002193_050 Hb_005545_090 Hb_005545_090 Hb_175087_010--Hb_005545_090 Hb_175087_010--Hb_002290_100 Hb_116352_010 Hb_116352_010 Hb_175087_010--Hb_116352_010 Hb_001300_120 Hb_001300_120 Hb_175087_010--Hb_001300_120 Hb_028841_020 Hb_028841_020 Hb_175087_010--Hb_028841_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.332098 0.0688747 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0318071 0

CAGE analysis