Hb_168054_010

Information

Type -
Description -
Location Contig168054: 1656-2979
Sequence    

Annotation

kegg
ID pop:POPTR_0002s15070g
description POPTRDRAFT_709764; peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein
nr
ID XP_010940927.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
swissprot
ID Q9LPC7
description Peptidyl-prolyl cis-trans isomerase CYP18-1 OS=Arabidopsis thaliana GN=CYP18-1 PE=2 SV=1
trembl
ID A0A067JXS2
description Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_14507 PE=3 SV=1
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerase cyp18-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15613: 344-3238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168054_010 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
2 Hb_010180_020 0.0685381465 - - hypothetical protein glysoja_030394 [Glycine soja]
3 Hb_001369_660 0.0693938324 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
4 Hb_001314_100 0.0719409832 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
5 Hb_001604_080 0.0724608254 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
6 Hb_003687_110 0.0786682676 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
7 Hb_165132_010 0.0816238925 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
8 Hb_000163_160 0.0824225205 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
9 Hb_001279_310 0.082898565 - - hypothetical protein JCGZ_10212 [Jatropha curcas]
10 Hb_101705_030 0.0839004134 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
11 Hb_001369_640 0.0857334739 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
12 Hb_004306_020 0.0873076484 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
13 Hb_000815_040 0.0873273975 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
14 Hb_002289_120 0.0879794804 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
15 Hb_128048_010 0.0881543888 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
16 Hb_007432_080 0.0889051697 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
17 Hb_012573_070 0.0894689754 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000120_760 0.0901415534 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
19 Hb_033153_090 0.0914513794 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
20 Hb_001936_080 0.0935159147 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]

Gene co-expression network

sample Hb_168054_010 Hb_168054_010 Hb_010180_020 Hb_010180_020 Hb_168054_010--Hb_010180_020 Hb_001369_660 Hb_001369_660 Hb_168054_010--Hb_001369_660 Hb_001314_100 Hb_001314_100 Hb_168054_010--Hb_001314_100 Hb_001604_080 Hb_001604_080 Hb_168054_010--Hb_001604_080 Hb_003687_110 Hb_003687_110 Hb_168054_010--Hb_003687_110 Hb_165132_010 Hb_165132_010 Hb_168054_010--Hb_165132_010 Hb_010180_020--Hb_001604_080 Hb_004545_060 Hb_004545_060 Hb_010180_020--Hb_004545_060 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_002411_170 Hb_002411_170 Hb_010180_020--Hb_002411_170 Hb_000024_080 Hb_000024_080 Hb_010180_020--Hb_000024_080 Hb_000815_040 Hb_000815_040 Hb_010180_020--Hb_000815_040 Hb_004440_050 Hb_004440_050 Hb_001369_660--Hb_004440_050 Hb_000163_160 Hb_000163_160 Hb_001369_660--Hb_000163_160 Hb_001369_660--Hb_010180_020 Hb_001369_660--Hb_001604_080 Hb_001369_660--Hb_003687_110 Hb_012573_070 Hb_012573_070 Hb_001314_100--Hb_012573_070 Hb_001369_640 Hb_001369_640 Hb_001314_100--Hb_001369_640 Hb_001314_100--Hb_165132_010 Hb_000029_200 Hb_000029_200 Hb_001314_100--Hb_000029_200 Hb_134949_020 Hb_134949_020 Hb_001314_100--Hb_134949_020 Hb_001604_080--Hb_000815_040 Hb_000103_560 Hb_000103_560 Hb_001604_080--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_001604_080--Hb_063716_050 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250 Hb_000529_190 Hb_000529_190 Hb_001604_080--Hb_000529_190 Hb_002874_190 Hb_002874_190 Hb_003687_110--Hb_002874_190 Hb_003687_110--Hb_165132_010 Hb_003687_110--Hb_010180_020 Hb_003687_110--Hb_001604_080 Hb_002007_060 Hb_002007_060 Hb_003687_110--Hb_002007_060 Hb_003687_110--Hb_002411_170 Hb_165132_010--Hb_134949_020 Hb_001662_070 Hb_001662_070 Hb_165132_010--Hb_001662_070 Hb_165132_010--Hb_002874_190 Hb_033594_110 Hb_033594_110 Hb_165132_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_165132_010--Hb_002518_050 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.7179 18.2539 44.2619 37.6792 37.1824 82.4022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.9849 105.657 47.5494 21.5807 17.455

CAGE analysis