Hb_168319_010

Information

Type -
Description -
Location Contig168319: 14281-17100
Sequence    

Annotation

kegg
ID rcu:RCOM_1619630
description amino acid binding protein, putative
nr
ID XP_012067837.1
description PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
swissprot
ID Q8LJW3
description ACT domain-containing protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=2 SV=1
trembl
ID A0A067KYX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15764 PE=4 SV=1
Gene Ontology
ID GO:0016597
description amino acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15617: 13711-16980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168319_010 0.0 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
2 Hb_012340_060 0.1302764746 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002027_030 0.1484429899 - - conserved hypothetical protein [Ricinus communis]
4 Hb_025708_010 0.1558696423 - - hypothetical protein MTR_1g051060 [Medicago truncatula]
5 Hb_025708_020 0.1566777941 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_001619_040 0.1655638826 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
7 Hb_000123_220 0.1717121544 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
8 Hb_000645_200 0.1741294975 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
9 Hb_000152_330 0.1746038616 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
10 Hb_027654_080 0.176096241 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
11 Hb_023344_080 0.1773894373 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
12 Hb_001486_200 0.1804437341 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
13 Hb_000656_390 0.1858520613 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
14 Hb_000983_080 0.1891368731 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
15 Hb_001616_110 0.1898430536 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
16 Hb_001105_110 0.1902213713 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010891_020 0.1935029116 - - Cucumisin precursor, putative [Ricinus communis]
18 Hb_001381_060 0.194691642 - - monoxygenase, putative [Ricinus communis]
19 Hb_002042_170 0.1952906463 - - RING/U-box superfamily protein [Theobroma cacao]
20 Hb_010872_070 0.1958579814 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_168319_010 Hb_168319_010 Hb_012340_060 Hb_012340_060 Hb_168319_010--Hb_012340_060 Hb_002027_030 Hb_002027_030 Hb_168319_010--Hb_002027_030 Hb_025708_010 Hb_025708_010 Hb_168319_010--Hb_025708_010 Hb_025708_020 Hb_025708_020 Hb_168319_010--Hb_025708_020 Hb_001619_040 Hb_001619_040 Hb_168319_010--Hb_001619_040 Hb_000123_220 Hb_000123_220 Hb_168319_010--Hb_000123_220 Hb_001105_110 Hb_001105_110 Hb_012340_060--Hb_001105_110 Hb_002232_430 Hb_002232_430 Hb_012340_060--Hb_002232_430 Hb_027654_080 Hb_027654_080 Hb_012340_060--Hb_027654_080 Hb_004429_020 Hb_004429_020 Hb_012340_060--Hb_004429_020 Hb_001341_100 Hb_001341_100 Hb_012340_060--Hb_001341_100 Hb_002027_030--Hb_012340_060 Hb_002027_030--Hb_000123_220 Hb_002027_030--Hb_025708_010 Hb_005539_260 Hb_005539_260 Hb_002027_030--Hb_005539_260 Hb_001817_100 Hb_001817_100 Hb_002027_030--Hb_001817_100 Hb_025708_010--Hb_025708_020 Hb_025708_010--Hb_012340_060 Hb_000123_240 Hb_000123_240 Hb_025708_010--Hb_000123_240 Hb_025708_010--Hb_000123_220 Hb_007262_030 Hb_007262_030 Hb_025708_010--Hb_007262_030 Hb_000226_080 Hb_000226_080 Hb_025708_020--Hb_000226_080 Hb_025708_020--Hb_012340_060 Hb_023344_060 Hb_023344_060 Hb_025708_020--Hb_023344_060 Hb_000656_390 Hb_000656_390 Hb_025708_020--Hb_000656_390 Hb_000152_330 Hb_000152_330 Hb_001619_040--Hb_000152_330 Hb_001619_040--Hb_000226_080 Hb_024468_010 Hb_024468_010 Hb_001619_040--Hb_024468_010 Hb_001117_130 Hb_001117_130 Hb_001619_040--Hb_001117_130 Hb_005356_040 Hb_005356_040 Hb_001619_040--Hb_005356_040 Hb_000649_150 Hb_000649_150 Hb_001619_040--Hb_000649_150 Hb_006120_150 Hb_006120_150 Hb_000123_220--Hb_006120_150 Hb_000123_220--Hb_012340_060 Hb_004680_010 Hb_004680_010 Hb_000123_220--Hb_004680_010 Hb_002042_170 Hb_002042_170 Hb_000123_220--Hb_002042_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.994451 11.4802 6.61784 9.86506 0.140974 0.233494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57173 5.96192 10.3712 5.60346 4.68906

CAGE analysis