Hb_168319_020

Information

Type -
Description -
Location Contig168319: 27683-27997
Sequence    

Annotation

kegg
ID rcu:RCOM_1619640
description hypothetical protein
nr
ID XP_002512032.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RE93
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1619640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168319_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000110_390 0.1872121683 - - PREDICTED: uncharacterized protein LOC103338992 [Prunus mume]
3 Hb_001894_180 0.1956702191 - - galactinol synthase [Manihot esculenta]
4 Hb_009010_040 0.2101444778 - - Peptide transporter, putative [Ricinus communis]
5 Hb_003360_050 0.2436770895 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_153774_010 0.2487676711 - - conserved hypothetical protein [Ricinus communis]
7 Hb_050229_030 0.2540221075 - - unnamed protein product [Coffea canephora]
8 Hb_177587_010 0.2574806477 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
9 Hb_007477_020 0.2580622204 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
10 Hb_002999_010 0.2617240809 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
11 Hb_000334_040 0.2636350154 - - hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
12 Hb_005373_030 0.2680028599 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009111_060 0.2686571378 - - PREDICTED: sodium transporter HKT1-like [Jatropha curcas]
14 Hb_000237_010 0.2696358769 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
15 Hb_001013_070 0.2705648016 - - -
16 Hb_001998_100 0.2713765879 - - -
17 Hb_000480_050 0.2723179058 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
18 Hb_010050_010 0.2727859713 - - -
19 Hb_033153_030 0.2734231611 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
20 Hb_010377_020 0.2734244956 - - -

Gene co-expression network

sample Hb_168319_020 Hb_168319_020 Hb_000110_390 Hb_000110_390 Hb_168319_020--Hb_000110_390 Hb_001894_180 Hb_001894_180 Hb_168319_020--Hb_001894_180 Hb_009010_040 Hb_009010_040 Hb_168319_020--Hb_009010_040 Hb_003360_050 Hb_003360_050 Hb_168319_020--Hb_003360_050 Hb_153774_010 Hb_153774_010 Hb_168319_020--Hb_153774_010 Hb_050229_030 Hb_050229_030 Hb_168319_020--Hb_050229_030 Hb_010377_020 Hb_010377_020 Hb_000110_390--Hb_010377_020 Hb_001268_320 Hb_001268_320 Hb_000110_390--Hb_001268_320 Hb_001242_010 Hb_001242_010 Hb_000110_390--Hb_001242_010 Hb_002092_030 Hb_002092_030 Hb_000110_390--Hb_002092_030 Hb_000110_390--Hb_001894_180 Hb_000398_050 Hb_000398_050 Hb_001894_180--Hb_000398_050 Hb_000028_500 Hb_000028_500 Hb_001894_180--Hb_000028_500 Hb_126711_010 Hb_126711_010 Hb_001894_180--Hb_126711_010 Hb_001894_180--Hb_010377_020 Hb_001329_030 Hb_001329_030 Hb_001894_180--Hb_001329_030 Hb_009111_060 Hb_009111_060 Hb_009010_040--Hb_009111_060 Hb_001998_100 Hb_001998_100 Hb_009010_040--Hb_001998_100 Hb_005356_050 Hb_005356_050 Hb_009010_040--Hb_005356_050 Hb_002193_070 Hb_002193_070 Hb_009010_040--Hb_002193_070 Hb_009010_040--Hb_153774_010 Hb_031822_020 Hb_031822_020 Hb_009010_040--Hb_031822_020 Hb_003360_050--Hb_002193_070 Hb_003360_050--Hb_001998_100 Hb_003360_050--Hb_009010_040 Hb_003014_010 Hb_003014_010 Hb_003360_050--Hb_003014_010 Hb_000042_180 Hb_000042_180 Hb_003360_050--Hb_000042_180 Hb_003360_050--Hb_153774_010 Hb_153774_010--Hb_001998_100 Hb_153774_010--Hb_009111_060 Hb_002759_270 Hb_002759_270 Hb_153774_010--Hb_002759_270 Hb_153774_010--Hb_005356_050 Hb_002925_040 Hb_002925_040 Hb_153774_010--Hb_002925_040 Hb_000334_040 Hb_000334_040 Hb_050229_030--Hb_000334_040 Hb_177587_010 Hb_177587_010 Hb_050229_030--Hb_177587_010 Hb_009466_040 Hb_009466_040 Hb_050229_030--Hb_009466_040 Hb_001645_100 Hb_001645_100 Hb_050229_030--Hb_001645_100 Hb_001013_070 Hb_001013_070 Hb_050229_030--Hb_001013_070 Hb_008385_010 Hb_008385_010 Hb_050229_030--Hb_008385_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.256408 0 2.63379 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.380785 0.240178 0

CAGE analysis