Hb_168319_060

Information

Type -
Description -
Location Contig168319: 47347-49571
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14950g
description POPTRDRAFT_566769; hypothetical protein
nr
ID XP_011009723.1
description PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
swissprot
ID Q9LUC9
description Cytochrome P450 72A11 OS=Arabidopsis thaliana GN=CYP72A11 PE=2 SV=1
trembl
ID B9HWV8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14950g PE=3 SV=2
Gene Ontology
ID GO:0016491
description cytochrome p450 cyp749a22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15619: 47780-48673 , PASA_asmbl_15620: 48742-48962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168319_060 0.0 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
2 Hb_007875_020 0.0860299199 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
3 Hb_065521_010 0.089792998 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
4 Hb_004943_010 0.091015651 - - cationic amino acid transporter, putative [Ricinus communis]
5 Hb_060152_010 0.0916891883 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
6 Hb_029510_090 0.0962521993 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
7 Hb_000254_060 0.1020643656 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000751_060 0.1067850788 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
9 Hb_000847_120 0.1103322717 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
10 Hb_001622_020 0.1147785888 - - -
11 Hb_000645_250 0.11641658 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
12 Hb_000258_210 0.119167145 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
13 Hb_000000_200 0.1222528899 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
14 Hb_001778_040 0.127230005 - - hypothetical protein VITISV_021035 [Vitis vinifera]
15 Hb_002448_020 0.1287349544 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
16 Hb_000836_260 0.1329092174 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
17 Hb_007850_110 0.1332301686 - - MADS-box transcription factor 3 [Hevea brasiliensis]
18 Hb_000609_020 0.1343902093 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
19 Hb_000751_070 0.1347433478 - - -
20 Hb_014967_020 0.1380985693 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_168319_060 Hb_168319_060 Hb_007875_020 Hb_007875_020 Hb_168319_060--Hb_007875_020 Hb_065521_010 Hb_065521_010 Hb_168319_060--Hb_065521_010 Hb_004943_010 Hb_004943_010 Hb_168319_060--Hb_004943_010 Hb_060152_010 Hb_060152_010 Hb_168319_060--Hb_060152_010 Hb_029510_090 Hb_029510_090 Hb_168319_060--Hb_029510_090 Hb_000254_060 Hb_000254_060 Hb_168319_060--Hb_000254_060 Hb_007875_020--Hb_065521_010 Hb_007017_100 Hb_007017_100 Hb_007875_020--Hb_007017_100 Hb_007386_030 Hb_007386_030 Hb_007875_020--Hb_007386_030 Hb_007875_020--Hb_029510_090 Hb_002448_020 Hb_002448_020 Hb_007875_020--Hb_002448_020 Hb_065521_010--Hb_029510_090 Hb_065521_010--Hb_002448_020 Hb_014967_020 Hb_014967_020 Hb_065521_010--Hb_014967_020 Hb_065521_010--Hb_007386_030 Hb_000836_260 Hb_000836_260 Hb_004943_010--Hb_000836_260 Hb_007850_110 Hb_007850_110 Hb_004943_010--Hb_007850_110 Hb_002622_010 Hb_002622_010 Hb_004943_010--Hb_002622_010 Hb_000258_210 Hb_000258_210 Hb_004943_010--Hb_000258_210 Hb_001109_130 Hb_001109_130 Hb_004943_010--Hb_001109_130 Hb_000751_060 Hb_000751_060 Hb_060152_010--Hb_000751_060 Hb_000751_070 Hb_000751_070 Hb_060152_010--Hb_000751_070 Hb_000645_250 Hb_000645_250 Hb_060152_010--Hb_000645_250 Hb_001622_020 Hb_001622_020 Hb_060152_010--Hb_001622_020 Hb_000226_110 Hb_000226_110 Hb_060152_010--Hb_000226_110 Hb_029510_090--Hb_007386_030 Hb_029510_090--Hb_002448_020 Hb_029510_090--Hb_000254_060 Hb_000254_060--Hb_001622_020 Hb_001778_040 Hb_001778_040 Hb_000254_060--Hb_001778_040 Hb_000254_060--Hb_065521_010 Hb_000054_130 Hb_000054_130 Hb_000254_060--Hb_000054_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0210929 3.43769 8.82543 17.6164 0.0303098 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0719343 0.0188663 0 24.9703 19.1862

CAGE analysis