Hb_168343_010

Information

Type -
Description -
Location Contig168343: 881-1342
Sequence    

Annotation

kegg
ID rcu:RCOM_0819890
description sensory transduction histidine kinase, putative
nr
ID XP_002525199.1
description sensory transduction histidine kinase, putative [Ricinus communis]
swissprot
ID Q93WK5
description Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=1 SV=1
trembl
ID B9SGT0
description Sensory transduction histidine kinase, putative OS=Ricinus communis GN=RCOM_0819890 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator-like aprr7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168343_010 0.0 - - sensory transduction histidine kinase, putative [Ricinus communis]
2 Hb_012286_050 0.1773090309 - - PREDICTED: syntaxin-61 [Jatropha curcas]
3 Hb_000445_080 0.1923302643 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
4 Hb_006455_090 0.1978571594 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
5 Hb_006455_080 0.198354843 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
6 Hb_000424_240 0.2016300217 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
7 Hb_000914_070 0.2025918038 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
8 Hb_022288_020 0.203040154 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
9 Hb_006663_070 0.2054932049 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
10 Hb_001846_050 0.2094563476 - - -
11 Hb_006455_110 0.2110460374 - - bromodomain-containing protein, putative [Ricinus communis]
12 Hb_123202_010 0.2111314054 - - thioredoxin h [Hevea brasiliensis]
13 Hb_002205_060 0.2135188015 - - -
14 Hb_000878_130 0.2149233931 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001616_120 0.2161054911 - - -
16 Hb_075964_010 0.2182478534 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
17 Hb_000364_150 0.2182551375 - - -
18 Hb_005965_010 0.2207742995 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
19 Hb_002205_050 0.221077222 - - hypothetical protein JCGZ_03335 [Jatropha curcas]
20 Hb_001307_140 0.2248991601 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_168343_010 Hb_168343_010 Hb_012286_050 Hb_012286_050 Hb_168343_010--Hb_012286_050 Hb_000445_080 Hb_000445_080 Hb_168343_010--Hb_000445_080 Hb_006455_090 Hb_006455_090 Hb_168343_010--Hb_006455_090 Hb_006455_080 Hb_006455_080 Hb_168343_010--Hb_006455_080 Hb_000424_240 Hb_000424_240 Hb_168343_010--Hb_000424_240 Hb_000914_070 Hb_000914_070 Hb_168343_010--Hb_000914_070 Hb_000307_200 Hb_000307_200 Hb_012286_050--Hb_000307_200 Hb_002023_020 Hb_002023_020 Hb_012286_050--Hb_002023_020 Hb_012286_050--Hb_006455_090 Hb_000364_150 Hb_000364_150 Hb_012286_050--Hb_000364_150 Hb_020902_010 Hb_020902_010 Hb_012286_050--Hb_020902_010 Hb_039253_010 Hb_039253_010 Hb_012286_050--Hb_039253_010 Hb_001846_050 Hb_001846_050 Hb_000445_080--Hb_001846_050 Hb_000445_080--Hb_006455_080 Hb_094647_010 Hb_094647_010 Hb_000445_080--Hb_094647_010 Hb_000878_130 Hb_000878_130 Hb_000445_080--Hb_000878_130 Hb_006198_050 Hb_006198_050 Hb_000445_080--Hb_006198_050 Hb_006455_090--Hb_006455_080 Hb_006455_110 Hb_006455_110 Hb_006455_090--Hb_006455_110 Hb_003711_040 Hb_003711_040 Hb_006455_090--Hb_003711_040 Hb_006455_090--Hb_000307_200 Hb_006455_090--Hb_020902_010 Hb_006455_080--Hb_006455_110 Hb_000248_050 Hb_000248_050 Hb_006455_080--Hb_000248_050 Hb_006455_080--Hb_003711_040 Hb_000295_100 Hb_000295_100 Hb_006455_080--Hb_000295_100 Hb_000453_080 Hb_000453_080 Hb_006455_080--Hb_000453_080 Hb_000424_240--Hb_012286_050 Hb_001102_150 Hb_001102_150 Hb_000424_240--Hb_001102_150 Hb_000424_240--Hb_000307_200 Hb_006026_040 Hb_006026_040 Hb_000424_240--Hb_006026_040 Hb_000696_350 Hb_000696_350 Hb_000424_240--Hb_000696_350 Hb_025814_010 Hb_025814_010 Hb_000424_240--Hb_025814_010 Hb_000914_070--Hb_000364_150 Hb_012490_040 Hb_012490_040 Hb_000914_070--Hb_012490_040 Hb_005117_010 Hb_005117_010 Hb_000914_070--Hb_005117_010 Hb_001266_080 Hb_001266_080 Hb_000914_070--Hb_001266_080 Hb_000347_200 Hb_000347_200 Hb_000914_070--Hb_000347_200 Hb_004055_140 Hb_004055_140 Hb_000914_070--Hb_004055_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3462 14.7146 3.90338 9.3731 26.5534 188.764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.449 10.979 67.576 24.9569 34.6769

CAGE analysis