Hb_168418_010

Information

Type -
Description -
Location Contig168418: 9024-13904
Sequence    

Annotation

kegg
ID bvg:104886272
description uncharacterized LOC104886272
nr
ID XP_009786188.1
description PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID F6GZX4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g09780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168418_010 0.0 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
2 Hb_031862_050 0.2203747792 - - Cell division cycle protein, putative [Ricinus communis]
3 Hb_010588_010 0.2277921257 - - -
4 Hb_113733_010 0.2351050312 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
5 Hb_029162_020 0.2757101323 - - -
6 Hb_002750_020 0.2839894645 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
7 Hb_048610_010 0.2842077567 - - -
8 Hb_001230_010 0.2939413286 - - -
9 Hb_007849_030 0.2949555685 - - l-allo-threonine aldolase, putative [Ricinus communis]
10 Hb_174107_010 0.2974791732 - - PREDICTED: uncharacterized protein LOC105775323 [Gossypium raimondii]
11 Hb_004696_050 0.2994394843 - - -
12 Hb_027751_030 0.3011109474 - - -
13 Hb_004116_110 0.309764931 - - hypothetical protein MTR_3g064100 [Medicago truncatula]
14 Hb_002007_290 0.3110112583 - - -
15 Hb_175445_010 0.3149629244 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
16 Hb_004060_010 0.3198754175 - - -
17 Hb_026766_010 0.3224605211 - - -
18 Hb_000046_020 0.3232031549 - - -
19 Hb_003756_010 0.3286794063 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
20 Hb_001186_050 0.3287803161 - - -

Gene co-expression network

sample Hb_168418_010 Hb_168418_010 Hb_031862_050 Hb_031862_050 Hb_168418_010--Hb_031862_050 Hb_010588_010 Hb_010588_010 Hb_168418_010--Hb_010588_010 Hb_113733_010 Hb_113733_010 Hb_168418_010--Hb_113733_010 Hb_029162_020 Hb_029162_020 Hb_168418_010--Hb_029162_020 Hb_002750_020 Hb_002750_020 Hb_168418_010--Hb_002750_020 Hb_048610_010 Hb_048610_010 Hb_168418_010--Hb_048610_010 Hb_001230_010 Hb_001230_010 Hb_031862_050--Hb_001230_010 Hb_002007_290 Hb_002007_290 Hb_031862_050--Hb_002007_290 Hb_000046_020 Hb_000046_020 Hb_031862_050--Hb_000046_020 Hb_031862_050--Hb_029162_020 Hb_031862_050--Hb_048610_010 Hb_001186_050 Hb_001186_050 Hb_010588_010--Hb_001186_050 Hb_002741_030 Hb_002741_030 Hb_010588_010--Hb_002741_030 Hb_036285_010 Hb_036285_010 Hb_010588_010--Hb_036285_010 Hb_002205_200 Hb_002205_200 Hb_010588_010--Hb_002205_200 Hb_174107_010 Hb_174107_010 Hb_010588_010--Hb_174107_010 Hb_003073_140 Hb_003073_140 Hb_113733_010--Hb_003073_140 Hb_065642_010 Hb_065642_010 Hb_113733_010--Hb_065642_010 Hb_007849_030 Hb_007849_030 Hb_113733_010--Hb_007849_030 Hb_019762_040 Hb_019762_040 Hb_113733_010--Hb_019762_040 Hb_113733_010--Hb_031862_050 Hb_029162_020--Hb_048610_010 Hb_144101_010 Hb_144101_010 Hb_029162_020--Hb_144101_010 Hb_029162_020--Hb_001230_010 Hb_029162_020--Hb_002007_290 Hb_151978_010 Hb_151978_010 Hb_002750_020--Hb_151978_010 Hb_010098_070 Hb_010098_070 Hb_002750_020--Hb_010098_070 Hb_001053_160 Hb_001053_160 Hb_002750_020--Hb_001053_160 Hb_039635_010 Hb_039635_010 Hb_002750_020--Hb_039635_010 Hb_004223_200 Hb_004223_200 Hb_002750_020--Hb_004223_200 Hb_048610_010--Hb_001230_010 Hb_048610_010--Hb_144101_010 Hb_048610_010--Hb_002007_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137394 0 0 0 0 0.054929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0419508 0.0989954 0 0.0132258 0

CAGE analysis