Hb_168436_010

Information

Type -
Description -
Location Contig168436: 3590-11483
Sequence    

Annotation

kegg
ID cit:102626915
description probable receptor-like protein kinase At1g67000-like
nr
ID XP_006485860.1
description PREDICTED: probable receptor-like protein kinase At1g67000-like [Citrus sinensis]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID G7KMN1
description Receptor-like kinase OS=Medicago truncatula GN=MTR_6g083760 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168436_010 0.0 - - PREDICTED: probable receptor-like protein kinase At1g67000-like [Citrus sinensis]
2 Hb_021409_060 0.0047253279 - - PREDICTED: aluminum-activated malate transporter 10-like [Jatropha curcas]
3 Hb_002127_010 0.008551683 - - Aluminum activated malate transporter family protein, putative [Theobroma cacao]
4 Hb_001268_360 0.0177098674 - - PREDICTED: uncharacterized protein LOC104447679 [Eucalyptus grandis]
5 Hb_010896_010 0.0247990604 - - -
6 Hb_004899_160 0.025667634 - - -
7 Hb_156055_020 0.0334094944 - - conserved hypothetical protein [Ricinus communis]
8 Hb_067197_020 0.0359289319 - - -
9 Hb_119789_010 0.0422946741 - - PREDICTED: uncharacterized protein LOC105134438 [Populus euphratica]
10 Hb_081445_010 0.056044234 - - hypothetical protein JCGZ_04541 [Jatropha curcas]
11 Hb_101733_020 0.0566494234 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Jatropha curcas]
12 Hb_000896_140 0.0638892193 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
13 Hb_007040_030 0.0644994456 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
14 Hb_000672_070 0.0658486594 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
15 Hb_000926_170 0.0710320597 - - conserved hypothetical protein [Ricinus communis]
16 Hb_048826_010 0.076896741 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB28-like [Jatropha curcas]
17 Hb_002582_090 0.079549741 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
18 Hb_132148_010 0.0891946883 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
19 Hb_000002_130 0.1135251631 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
20 Hb_005843_070 0.1138483899 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]

Gene co-expression network

sample Hb_168436_010 Hb_168436_010 Hb_021409_060 Hb_021409_060 Hb_168436_010--Hb_021409_060 Hb_002127_010 Hb_002127_010 Hb_168436_010--Hb_002127_010 Hb_001268_360 Hb_001268_360 Hb_168436_010--Hb_001268_360 Hb_010896_010 Hb_010896_010 Hb_168436_010--Hb_010896_010 Hb_004899_160 Hb_004899_160 Hb_168436_010--Hb_004899_160 Hb_156055_020 Hb_156055_020 Hb_168436_010--Hb_156055_020 Hb_021409_060--Hb_002127_010 Hb_021409_060--Hb_004899_160 Hb_021409_060--Hb_001268_360 Hb_021409_060--Hb_156055_020 Hb_021409_060--Hb_010896_010 Hb_002127_010--Hb_001268_360 Hb_002127_010--Hb_010896_010 Hb_067197_020 Hb_067197_020 Hb_002127_010--Hb_067197_020 Hb_002127_010--Hb_004899_160 Hb_001268_360--Hb_010896_010 Hb_001268_360--Hb_067197_020 Hb_081445_010 Hb_081445_010 Hb_001268_360--Hb_081445_010 Hb_010896_010--Hb_067197_020 Hb_010896_010--Hb_081445_010 Hb_004899_160--Hb_156055_020 Hb_119789_010 Hb_119789_010 Hb_004899_160--Hb_119789_010 Hb_000896_140 Hb_000896_140 Hb_004899_160--Hb_000896_140 Hb_156055_020--Hb_119789_010 Hb_156055_020--Hb_000896_140 Hb_007040_030 Hb_007040_030 Hb_156055_020--Hb_007040_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.080689 0.0150658 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis