Hb_168707_030

Information

Type -
Description -
Location Contig168707: 13894-21437
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07080g
description POPTRDRAFT_819875; 26S proteasome regulatory subunit family protein
nr
ID XP_011025554.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
swissprot
ID Q9FIB6
description 26S proteasome non-ATPase regulatory subunit 12 homolog A OS=Arabidopsis thaliana GN=RPN5A PE=1 SV=1
trembl
ID B9HG65
description 26S proteasome regulatory subunit family protein OS=Populus trichocarpa GN=POPTR_0007s07080g PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 12 homolog a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15629: 14054-21361 , PASA_asmbl_15630: 19961-20171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168707_030 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
2 Hb_000057_040 0.0579902289 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_003642_060 0.0581779679 - - hypothetical protein RCOM_1189860 [Ricinus communis]
4 Hb_001006_170 0.0665817677 - - Endonuclease V, putative [Ricinus communis]
5 Hb_001439_150 0.0679021582 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
6 Hb_000000_080 0.0680216174 - - lipoate-protein ligase B, putative [Ricinus communis]
7 Hb_004195_160 0.0703799919 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
8 Hb_000120_950 0.0706005736 - - PREDICTED: protein GRIP [Jatropha curcas]
9 Hb_000017_120 0.0717795973 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
10 Hb_005306_110 0.0744740419 - - casein kinase, putative [Ricinus communis]
11 Hb_001030_120 0.0752069097 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
12 Hb_001623_420 0.0771508163 - - nucleotide binding protein, putative [Ricinus communis]
13 Hb_000190_140 0.079043733 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
14 Hb_010381_070 0.0791149067 - - PREDICTED: protein STU1-like [Jatropha curcas]
15 Hb_001511_020 0.0792590894 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
16 Hb_000099_240 0.080048045 - - 60S ribosomal protein L7a, putative [Ricinus communis]
17 Hb_039837_010 0.0811623355 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
18 Hb_006185_050 0.0812672963 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
19 Hb_001677_210 0.0816372082 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
20 Hb_001377_290 0.0816379633 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_168707_030 Hb_168707_030 Hb_000057_040 Hb_000057_040 Hb_168707_030--Hb_000057_040 Hb_003642_060 Hb_003642_060 Hb_168707_030--Hb_003642_060 Hb_001006_170 Hb_001006_170 Hb_168707_030--Hb_001006_170 Hb_001439_150 Hb_001439_150 Hb_168707_030--Hb_001439_150 Hb_000000_080 Hb_000000_080 Hb_168707_030--Hb_000000_080 Hb_004195_160 Hb_004195_160 Hb_168707_030--Hb_004195_160 Hb_002609_110 Hb_002609_110 Hb_000057_040--Hb_002609_110 Hb_168000_010 Hb_168000_010 Hb_000057_040--Hb_168000_010 Hb_000057_040--Hb_003642_060 Hb_000057_040--Hb_004195_160 Hb_001252_080 Hb_001252_080 Hb_000057_040--Hb_001252_080 Hb_001214_130 Hb_001214_130 Hb_003642_060--Hb_001214_130 Hb_028639_060 Hb_028639_060 Hb_003642_060--Hb_028639_060 Hb_000905_190 Hb_000905_190 Hb_003642_060--Hb_000905_190 Hb_000089_220 Hb_000089_220 Hb_003642_060--Hb_000089_220 Hb_003642_060--Hb_004195_160 Hb_000017_120 Hb_000017_120 Hb_001006_170--Hb_000017_120 Hb_005503_030 Hb_005503_030 Hb_001006_170--Hb_005503_030 Hb_033843_010 Hb_033843_010 Hb_001006_170--Hb_033843_010 Hb_002149_020 Hb_002149_020 Hb_001006_170--Hb_002149_020 Hb_001006_170--Hb_000000_080 Hb_007951_060 Hb_007951_060 Hb_001439_150--Hb_007951_060 Hb_002685_140 Hb_002685_140 Hb_001439_150--Hb_002685_140 Hb_001511_020 Hb_001511_020 Hb_001439_150--Hb_001511_020 Hb_001439_150--Hb_000000_080 Hb_000327_120 Hb_000327_120 Hb_001439_150--Hb_000327_120 Hb_006065_020 Hb_006065_020 Hb_000000_080--Hb_006065_020 Hb_000030_010 Hb_000030_010 Hb_000000_080--Hb_000030_010 Hb_000000_080--Hb_000017_120 Hb_000000_080--Hb_007951_060 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_000398_180 Hb_000398_180 Hb_004195_160--Hb_000398_180 Hb_001030_120 Hb_001030_120 Hb_004195_160--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_004195_160--Hb_002609_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
185.759 65.4541 65.233 58.0449 162.881 191.894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
113.987 145.288 164.303 67.9845 24.4055

CAGE analysis