Hb_168773_010

Information

Type -
Description -
Location Contig168773: 88-866
Sequence    

Annotation

kegg
ID rcu:RCOM_0292850
description abc transporter, putative (EC:3.6.3.44)
nr
ID AIU41636.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9LZB8
description ABC transporter B family member 29, chloroplastic OS=Arabidopsis thaliana GN=ABCB29 PE=2 SV=1
trembl
ID A0A097P9R7
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCB29 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15631: 220-863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168773_010 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_002551_020 0.1032603853 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
3 Hb_000865_060 0.1173690495 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
4 Hb_010436_060 0.1211150004 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
5 Hb_005117_010 0.1237011897 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
6 Hb_011671_220 0.1271453369 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001623_510 0.1292498576 - - transporter, putative [Ricinus communis]
8 Hb_005701_010 0.1320084066 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
9 Hb_034271_030 0.1380370595 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
10 Hb_000029_020 0.1386988349 - - Vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_001073_050 0.1390030239 - - -
12 Hb_012490_040 0.1453832245 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
13 Hb_002810_030 0.146725623 - - hypothetical protein VITISV_015705 [Vitis vinifera]
14 Hb_000482_090 0.1478722469 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
15 Hb_006641_010 0.1490175167 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
16 Hb_000914_070 0.1496756446 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
17 Hb_010436_020 0.1499096268 - - Dicer-like protein 4 [Morus notabilis]
18 Hb_004109_190 0.1505721102 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
19 Hb_002603_160 0.1510451942 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
20 Hb_064441_010 0.1515117976 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_168773_010 Hb_168773_010 Hb_002551_020 Hb_002551_020 Hb_168773_010--Hb_002551_020 Hb_000865_060 Hb_000865_060 Hb_168773_010--Hb_000865_060 Hb_010436_060 Hb_010436_060 Hb_168773_010--Hb_010436_060 Hb_005117_010 Hb_005117_010 Hb_168773_010--Hb_005117_010 Hb_011671_220 Hb_011671_220 Hb_168773_010--Hb_011671_220 Hb_001623_510 Hb_001623_510 Hb_168773_010--Hb_001623_510 Hb_002551_020--Hb_011671_220 Hb_004109_190 Hb_004109_190 Hb_002551_020--Hb_004109_190 Hb_000029_020 Hb_000029_020 Hb_002551_020--Hb_000029_020 Hb_002496_050 Hb_002496_050 Hb_002551_020--Hb_002496_050 Hb_000061_320 Hb_000061_320 Hb_002551_020--Hb_000061_320 Hb_007416_270 Hb_007416_270 Hb_000865_060--Hb_007416_270 Hb_001090_050 Hb_001090_050 Hb_000865_060--Hb_001090_050 Hb_001002_030 Hb_001002_030 Hb_000865_060--Hb_001002_030 Hb_005188_090 Hb_005188_090 Hb_000865_060--Hb_005188_090 Hb_011242_040 Hb_011242_040 Hb_000865_060--Hb_011242_040 Hb_006641_010 Hb_006641_010 Hb_010436_060--Hb_006641_010 Hb_003964_100 Hb_003964_100 Hb_010436_060--Hb_003964_100 Hb_010436_060--Hb_011671_220 Hb_001235_030 Hb_001235_030 Hb_010436_060--Hb_001235_030 Hb_001073_050 Hb_001073_050 Hb_010436_060--Hb_001073_050 Hb_010436_060--Hb_005117_010 Hb_005117_010--Hb_011671_220 Hb_000230_540 Hb_000230_540 Hb_005117_010--Hb_000230_540 Hb_004055_140 Hb_004055_140 Hb_005117_010--Hb_004055_140 Hb_005117_010--Hb_006641_010 Hb_000914_070 Hb_000914_070 Hb_005117_010--Hb_000914_070 Hb_020000_010 Hb_020000_010 Hb_011671_220--Hb_020000_010 Hb_011671_220--Hb_000230_540 Hb_011671_220--Hb_004055_140 Hb_005489_110 Hb_005489_110 Hb_001623_510--Hb_005489_110 Hb_000014_150 Hb_000014_150 Hb_001623_510--Hb_000014_150 Hb_001019_060 Hb_001019_060 Hb_001623_510--Hb_001019_060 Hb_007426_030 Hb_007426_030 Hb_001623_510--Hb_007426_030 Hb_001266_080 Hb_001266_080 Hb_001623_510--Hb_001266_080 Hb_034271_030 Hb_034271_030 Hb_001623_510--Hb_034271_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97719 1.65306 0.668415 2.0189 5.67908 11.1354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.76837 5.51044 11.9355 4.99535 5.05703

CAGE analysis